Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g04065 ATGAGTTTTCCAAACGAGTCCATGCCAGATTCTCCACAGAGAGCAAAGATTGGAAGAGGGAAGATTGAGATCAAGAGGATTGAGAACACAACGAATCGCCAAGTTACGTTCTGCAAGCGTAGAAATGGCTTGCTTAAGAAGGCATATGAATTATCTGTGCTTTGTGATGCTGAAGTTGCTCTTATAGTCTTCTCGACTCGCGGCCGCCTCTATGAATATGCAAATAACAGTGTCAAAGCATCAATTGAGAGGTACAAGAAAGCATGTTCAGATTCTTCTGGTGCTAAATCAGCTTCTGAGTCTAATGTTCAGTATTACCAGCAAGAAGCTGCCAAACTGCGTGTGCAAATCAGTAACTTGCAGAATCATAACAGGCAAATGATGGGTGAATCTTTGAGCAATATGAATGGTAAGGATCTCAGAAACCTTGAGAGTAAATTAGAAAAAGGAATTAGCAGAATTCGTTCCAAGAAGAATGAAATGCTGTTTGCAGAACTTGAGTACATGCAGAAGAGGGAGGTAGAGTTGCATAATAGTAACCAAGTTCTTAGAGCAAAGATATCAGAAAGTGAGCAGAGGAACAACCATAATGTTAATGTGTTGCCTGGAGGCACAAGCTTTGAATGCATGCAACCTCAGCAGCAGTTTGACTCTCGCGGCTACTTCCAAGTGAACGAATTACAACCCAATGATCAGTATGCCCGGCAAGATCAGATGTCTCTTCAATTTGTGTAA 735 0.415 MSFPNESMPDSPQRAKIGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVKASIERYKKACSDSSGAKSASESNVQYYQQEAAKLRVQISNLQNHNRQMMGESLSNMNGKDLRNLESKLEKGISRIRSKKNEMLFAELEYMQKREVELHNSNQVLRAKISESEQRNNHNVNVLPGGTSFECMQPQQQFDSRGYFQVNELQPNDQYARQDQMSLQFV 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g04065 244 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Mepo2g04065 244 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Mepo2g04065 244 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Mepo2g04065 244 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Mepo2g04065 244 ProSiteProfiles K-box domain profile. 103 193 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mepo2g04065 244 Coils Coil 140 160 - -
Mepo2g04065 244 Coils Coil 103 130 - -
Mepo2g04065 244 ProSitePatterns MADS-box domain signature. 19 73 IPR002100 GO:0003677|GO:0046983
Mepo2g04065 244 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Mepo2g04065 244 CDD MADS_MEF2_like 18 92 IPR033896 GO:0000977|GO:0045944
Mepo2g04065 244 PANTHER SERUM RESPONSE FACTOR HOMOLOG 19 192 - -
Mepo2g04065 244 SUPERFAMILY SRF-like 18 89 IPR036879 GO:0003677|GO:0046983
Mepo2g04065 244 Gene3D - 29 100 IPR036879 GO:0003677|GO:0046983
Mepo2g04065 244 FunFam agamous-like MADS-box protein AGL11 29 112 - -
Mepo2g04065 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 73 IPR002100 GO:0003677|GO:0046983
Mepo2g04065 244 Pfam K-box region 99 187 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g04065 Mepo-Chr2 49640103 49646196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g04065 7 244 MADS-box Gene Family AT3G58780 63.374 5.78e-105 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mepo2g04065 K-box 1.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g04065 K09264 - gmx:732595 369.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo2g04065 2 49640103 49646196 Mepo2g04065 2 49640103 49646196 ECH
Mepo2g04065 2 49640103 49646196 Mepo6g00639 6 6524986 6532731 PCT