Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g04053 ATGGATGAAGCAGGAAGTTCGAGTTCCTTGCCTCCTTTTCTGGCAAAGACTTATGAGATGGTGGATGATCGATCCTCGGATCCTATTGTTTCATGGAGTGCATCGAACAAAAGTTTCGTTGTGTGGAATCCTCCGGAATTCGCAAGGGTTTTGCTTCCGAGATTCTTTAAGCACAATAACTTCTCCAGTTTTATCAGGCAGCTGAATACATATGGATTTAGGAAAGTTGATCCAGAGCAATGGGAATTTGCCAATGATGATTTTATAAGGGGGCAACCGCATCTTATGAAGAATATTCATAGACGGAAGCCGGTTCATAGTCATTCTCTGCATAATCTTCAAGCACATGCCCCTCTAATGGAGTCTGAAAGGCAGAGTATGGTTGATGAAATAGAGAAGTTGAAACAGGATAGAGAACAACTCCTCAGGGAGACAAAGAGATACCAGCATGATTGGGAAGCGTATGAGATTCAAAAGCATTGTTCGAAAGATCAGTTGGAAAAATTGGAACAAAAGCAACAAAAGATGTTGTCCTCTGTTTCTGAAGCATTGCAGAAACCTATGATTGCTGTAAATCTCTTGCCACTGGCAGAAGCCATGGAGAGAAAGCGAAGGTTGCCGGCGAGAAGTGGTTGCTTTAATAATGAAGCTAATATTGAAGATGGTATGGAGACTTCTGTAGCTTTGCCCAGGGAAAATGCAGAGGATAACTCTACTTTGACGTTAAACAACGAGAGATTGGATCAACTTGAGGCATCCGTGGCATTTTGGGAGACTCTTGCACATGAAGTTGGCGACAATTTCGTTCACACTCATTCAAACATGGATTTAGATGAATCTACATGCTGCGCTGATAGTTTGTCCATATCTTGTCAGCAACTAGACGGTGAAGTTCGACCTAAGTCACCTGAAATTGACATGAACGTTGAACCAGCTGCTGCTGCTCTTGAGGCTGTTGCAGTAAAAGAACAACCTGCGAGAATCACCACTGCAGCAACTGGGGTTAATGATGTATTCTGGGAACAGTTCTTGACAGAGGATCCTGGTGCATCGGAAGCACAGGAAGTGCAATCAGAAAGAAAAGATAATAGTAGCAGAAAAAATGAAGGAAAACCTAGTGATCATGGTAGATTTTGGTGGAACATGCGGAAATCAAACAATCATCCAGAACAGATGGGGCATGTTAGTCAAGTAGAGAAAATTTAG 1206 0.4237 MDEAGSSSSLPPFLAKTYEMVDDRSSDPIVSWSASNKSFVVWNPPEFARVLLPRFFKHNNFSSFIRQLNTYGFRKVDPEQWEFANDDFIRGQPHLMKNIHRRKPVHSHSLHNLQAHAPLMESERQSMVDEIEKLKQDREQLLRETKRYQHDWEAYEIQKHCSKDQLEKLEQKQQKMLSSVSEALQKPMIAVNLLPLAEAMERKRRLPARSGCFNNEANIEDGMETSVALPRENAEDNSTLTLNNERLDQLEASVAFWETLAHEVGDNFVHTHSNMDLDESTCCADSLSISCQQLDGEVRPKSPEIDMNVEPAAAALEAVAVKEQPARITTAATGVNDVFWEQFLTEDPGASEAQEVQSERKDNSSRKNEGKPSDHGRFWWNMRKSNNHPEQMGHVSQVEKI 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g04053 401 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mepo2g04053 401 PRINTS Heat shock factor (HSF) domain signature 13 36 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mepo2g04053 401 PRINTS Heat shock factor (HSF) domain signature 51 63 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mepo2g04053 401 MobiDBLite consensus disorder prediction 353 378 - -
Mepo2g04053 401 ProSitePatterns HSF-type DNA-binding domain signature. 52 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mepo2g04053 401 FunFam Heat shock transcription factor 1 6 103 - -
Mepo2g04053 401 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 6 292 IPR027725 -
Mepo2g04053 401 MobiDBLite consensus disorder prediction 347 401 - -
Mepo2g04053 401 Pfam HSF-type DNA-binding 13 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mepo2g04053 401 Coils Coil 124 186 - -
Mepo2g04053 401 SMART hsfneu3 9 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mepo2g04053 401 SUPERFAMILY "Winged helix" DNA-binding domain 8 102 IPR036390 -
Mepo2g04053 401 Gene3D - 5 103 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g04053 Mepo-Chr2 49520440 49522507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g04053 1 400 HSF AT4G18880 50.608 1.63e-116 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Mepo2g04053 HSF_DNA-bind 1e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g04053 K09419 - gmx:100798004 603.594
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo2g04053 2 49520440 49522507 Mepo2g04053 2 49520440 49522507 ECH
Mepo6g00610 6 6259903 6261749 Mepo2g04053 2 49520440 49522507 ECH
Mepo2g04053 2 49520440 49522507 Mepo6g00610 6 6259903 6261749 PCT