Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g03954 ATGAAAGCTCATGGAAAAATAAACGGAAAAGCAGCTAATTACAAGCTCCAAAAACTTGATCACTCATTCATGGAGTCCTCCTCCTTTGACCTAACTGTGACTCCAATCTTTAAACCAATCCAACCCCTATCATCAGAAAATCCTTCTAGGAATGGTTTTTTCTCCATTCATTTTCATTACAACAACATAACTATTTCATCCACATCCAATGACCCAAAAAACCTTATCTTCAATTTTAGAACATTTGTCCGCGACAACTTCTTGATTCCTTATGATATCTTATGCAATTATAATGAACAAACACACATGGATGATGTTGTTCTAAACACTCTCTTCGTGTTCAGCATCTTCCGTGAGATGTCTAACGGCATATTAGACAAACTTTTGTCTGGCATTAAAGAATGTGCTAGAAAAATGGTTGCACTCAACATCGAAGAATGTGGAACGATGGAGATGAATGTGCTGCTCCGTAGAGTTACTACACTCGAGGTTGAAGAAGATGGATTAGATCAATACTATCAAAGTTCTATTTGTCAACAAAATGTGGGTTTGTCATCGAAATCGGATGATGAAACTATTTCCAATTCCAAAGATGAATGTTCAATTTGTTTGGAGGAGTTGCACAACGAATCGCAGTCAAAACTCTTTCATACAAAATGCTCTCATGTTTTTCATACTGAGTGTATTGCCCAGTTGATCTATGGATGCATCAATCGTTCGACTCCGTATTCTTGTCCATTGTGTCGACAAGAGATAATAATGTGA 765 0.3699 MKAHGKINGKAANYKLQKLDHSFMESSSFDLTVTPIFKPIQPLSSENPSRNGFFSIHFHYNNITISSTSNDPKNLIFNFRTFVRDNFLIPYDILCNYNEQTHMDDVVLNTLFVFSIFREMSNGILDKLLSGIKECARKMVALNIEECGTMEMNVLLRRVTTLEVEEDGLDQYYQSSICQQNVGLSSKSDDETISNSKDECSICLEELHNESQSKLFHTKCSHVFHTECIAQLIYGCINRSTPYSCPLCRQEIIM 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g03954 254 Pfam Ring finger domain 198 249 IPR001841 -
Mepo2g03954 254 CDD RING-H2 200 249 - -
Mepo2g03954 254 SUPERFAMILY RING/U-box 199 253 - -
Mepo2g03954 254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 182 254 IPR013083 -
Mepo2g03954 254 ProSiteProfiles Zinc finger RING-type profile. 200 249 IPR001841 -
Mepo2g03954 254 PANTHER RING ZINC FINGER PROTEIN-RELATED 175 252 - -
Mepo2g03954 254 SMART ring_2 200 248 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g03954 Mepo-Chr2 48661811 48668414 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g03954 162 252 C3H Transcription Factor Family AT2G42360 25.275 1.71e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g03954 - - mtr:11411367 283.493