LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mepo2g03947	ATGGCAGGGGTTTCGCTCCAGTGCGGTGATTGCGGTACTCTTTTGAAATCGGTTGAAGAAGCTCAAGAACATGCTGAACTCACCTCACACTCCAATTTCTCCGAATCCACTGAACCCGTTCTCAACCTCGTCTGCTCCACCTGCTCCAAACCTTGCCGATCCAAAACCGAGAGTGATTTGCACACCAAGAGAACCGGGCACACTGAATTTGCTGATAAGACTGCCGAAGCGGCAAAGCCAATAAGTTTAGAGGTTCCCAAGGGGAATTCAGAATCCCAAGAGGGTGGAACCAGTGATCAGAATGAAGAAATGGTTGTTCCTGAGGTTGATAAAAAGCTGCTCGAGGAACTTGAATCAATGGGCTTTTCAACAGCTCGTGCAACAAGGGCCCTTCATTTTTCGGGTAACACTAGCCTCGAGGCTGCTGTAACTTGGATAGAAAACCATGAGAATACGCCTGACATTGATGAAATGCCCTTGGTATCTGCGGTCAGTAAAGCTAAAGCTTCTAAGCCCTCTCTTACCCCAGAAGAAACAAATGCCATTCTAAAGGAACTAAGGGAGAAGGCTCGCAAGAAGAAGGAAGAAGAAGAGAAGAGAATGGAGAGAGAAAGAGAAAAGGAGAGAATTCGAGTCGGTAAGGAGTTGCTTGAAGCAAAGAGGATTGAAGAAGACAACGAGAGAAAACGGTTGTTAGCTTTAAGGAAAGCAGAGAAAGAGGAAGAGCGAAGGGCTAGAGAGAGAATCAAGCAAAAGTTGGAAGAAGACAAGGCTGAAAGAAGACGAAAACTTGGATTGGCTCCAGAGGAGCCTTCAACTGCCAAACCTTCAGCTGTTGTAGAGGAGAAAAAGAGTTTCCTGCCAATTAGACCTGCCACAAAAACCGAGCAGATGAGGGAGTGCTTGCGTTCTCTCAAGCAGAACCACAAGGAAGATGATGCCAGAGTGAAGAGAGCATTCCAAACTCTTCTAACTTATGTGGGGAATGTTGCCAGAAATCCTGCTGAAGAAAAATTCAGGAAGATTCGTCTTAGTAACGCAGCTTTTCAGGAAAGAGTTGGTGCTTTGAAAGGAGGCATTGAATTCCTTGAAATTTGCGGGTTTGAGAAGATTGATGGTGGTGAAGTTTTGTTTTTGCCTAGGGAGAAGGTTGATATTGCAGTCCTAAATTCAGCTGGATCTGAACTAGACTCTGCAATAAAGAATCCCTTTTTTGGAGTTCTTTAG	1227	0.4515	MAGVSLQCGDCGTLLKSVEEAQEHAELTSHSNFSESTEPVLNLVCSTCSKPCRSKTESDLHTKRTGHTEFADKTAEAAKPISLEVPKGNSESQEGGTSDQNEEMVVPEVDKKLLEELESMGFSTARATRALHFSGNTSLEAAVTWIENHENTPDIDEMPLVSAVSKAKASKPSLTPEETNAILKELREKARKKKEEEEKRMEREREKERIRVGKELLEAKRIEEDNERKRLLALRKAEKEEERRARERIKQKLEEDKAERRRKLGLAPEEPSTAKPSAVVEEKKSFLPIRPATKTEQMRECLRSLKQNHKEDDARVKRAFQTLLTYVGNVARNPAEEKFRKIRLSNAAFQERVGALKGGIEFLEICGFEKIDGGEVLFLPREKVDIAVLNSAGSELDSAIKNPFFGVL	408

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mepo2g03947	408	ProSitePatterns	Zinc finger C2H2 type domain signature.	8	30	IPR013087	-
	Mepo2g03947	408	PANTHER	F13M7.16 PROTEIN	1	408	-	-
	Mepo2g03947	408	Coils	Coil	222	259	-	-
	Mepo2g03947	408	Pfam	PUB domain	315	386	IPR018997	-
	Mepo2g03947	408	CDD	UBA_PUB_plant	108	156	-	-
	Mepo2g03947	408	ProSiteProfiles	Ubiquitin-associated domain (UBA) profile.	108	149	IPR015940	-
	Mepo2g03947	408	Pfam	UBA/TS-N domain	114	146	IPR015940	-
	Mepo2g03947	408	SMART	uba_6	110	148	IPR015940	-
	Mepo2g03947	408	SUPERFAMILY	PUG domain-like	290	404	IPR036339	-
	Mepo2g03947	408	MobiDBLite	consensus disorder prediction	86	100	-	-
	Mepo2g03947	408	CDD	PUB_UBA_plant	302	408	-	-
	Mepo2g03947	408	Coils	Coil	179	211	-	-
	Mepo2g03947	408	MobiDBLite	consensus disorder prediction	51	104	-	-
	Mepo2g03947	408	SUPERFAMILY	UBA-like	88	160	IPR009060	GO:0005515
	Mepo2g03947	408	Gene3D	-	87	163	-	-
	Mepo2g03947	408	MobiDBLite	consensus disorder prediction	255	286	-	-
	Mepo2g03947	408	Gene3D	-	290	398	-	-
	Mepo2g03947	408	MobiDBLite	consensus disorder prediction	54	74	-	-
	Mepo2g03947	408	SMART	PGNneu	318	381	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mepo2g03947	Mepo-Chr2	48615283	48622771	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mepo2g03947	96	408	C2H2 Transcription Factor Family	AT1G04850	75.949	7.22e-142	405

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mepo2g03947	K24348		-	gmx:100779218	588.571