Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g03880 ATGGGGAAGAAGAAGGTGGAGATAAAACTAATCGAGGACAAAAACAGTCGGCAAGTAACATTTTCAAAGAGGCGTAAGGGTTTGATCAAGAAAGCTAGTGAGTTGGCCGTTCTTTGCGACGTCAAGGTAGGGCTGGTCATGTTCTCTAACACTGGAAAGCTTTTCGAGTTCAACAATGGTGACAGTTTGCCCAACATCCACCAGCAATACATGGATCAGTTAGTAGCAAGCCGTGTTGATCACTCAAAGCAAGAAATCCGCACTGAAATTGCAAATACCGGGTTGGGTGAAGCGTTTTCTGAATTTGTCAAAAGGCACTTTGGTGTTTTTGAACTTGAGCACCTCAGTGTGACTGAACTTATGGAACTAGAGGAACTGATTCCTGCTGCACTTTCTCAAATACGATCATCAAAGATGCAATTGATGATGGAGTTGTTAGCGAACCTTAAACAAAAGGAACTTACTCTAAGAACGGAAAATGAGCTGTTGGAGAAACAGATTGCGGAATTGGAACAATCTAATGATAACTGTGAAAAAGAAAGGGTGATTCCACATAATTTATTCCCTATTTCTAATCAAATATGA 585 0.4068 MGKKKVEIKLIEDKNSRQVTFSKRRKGLIKKASELAVLCDVKVGLVMFSNTGKLFEFNNGDSLPNIHQQYMDQLVASRVDHSKQEIRTEIANTGLGEAFSEFVKRHFGVFELEHLSVTELMELEELIPAALSQIRSSKMQLMMELLANLKQKELTLRTENELLEKQIAELEQSNDNCEKERVIPHNLFPISNQI 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g03880 194 Coils Coil 146 180 - -
Mepo2g03880 194 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 161 - -
Mepo2g03880 194 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Mepo2g03880 194 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mepo2g03880 194 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mepo2g03880 194 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mepo2g03880 194 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mepo2g03880 194 Pfam K-box region 101 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mepo2g03880 194 Gene3D - 13 92 IPR036879 GO:0003677|GO:0046983
Mepo2g03880 194 ProSiteProfiles K-box domain profile. 65 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mepo2g03880 194 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
Mepo2g03880 194 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g03880 Mepo-Chr2 48030619 48042266 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g03880 1 171 MADS-box Gene Family AT1G26310 41.011 2.25e-33 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mepo2g03880 K-box 2.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g03880 - K09264 gmx:100804540 200.29