Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g03870 ATGGAACTTGACCGAGAAATCAATTTCGGGTTGTATGATACGCCCGGTGGAAATGGTTCTTGTGGCTCTGAGCTAATTCACGGTTCAGCATTTAATGAACCAAAGTTTTCTTGTGTATCTGGTGAACCATTGCTCAATCTAAGACTCGGTAAAAGGATGTATTTTGACGAAGTTTGTCCAGAAAGTGATTCCAAAAACCTATCTTTTTCAAGGGATCTCATGTCATCTTTAATTCTTGAAAAGAAATGCAAGTCCAATGGTCAGAACTTACGATGTCCACCACGCTGCCAGGTTGAAGGTTGTGGCCTTGACCTTTCATCTGCGAAAGATTATCATCGCAATCAAAGAGTTTGTGAAAGTCATTCCAAATCTCCTATGGTGGTTATAGATGGTATGGAACGTCGATTTTGCCAGCAATGTAGCAGGTTCCATGATCTGTTTGAGTTTGATGGAAAGAAGAAAAGCTGCAGACGACAACTTTCAAATCACAATGCAAGGCGCCGTAAATATCATCGTCAAGCTGTCCAATCAAGCCAATCAGCTTTGTCTTCTTCACGCAGTGATGGGAAGCAACAGATGAGTCCATTTGCTAATTCCAAGACTGCTACAAATTTAGCCTGCCAAAACATGCACAACATCAAGCTCCCCCAAGCAAAAGATTTTCTCTTGAAGCCTGCAAAAGACAACATTGACACACCAAGTACTGTCACTATGCTTTCTCATGATTCCAATTTCCATTTTACATCCAAAGTCCTTGCAACCAAGAGTATCAATCCAAATGTAGAAGATTTCATTAGCTTCTCTGATACAGATGATACACAAGACTTTACTTGTGCTTCCTCTCTTCTGTCAACCAGTCCGTGGGATTCATATGCGACCAAATCCATTTCTCTAGCACATTCTGATCGTACAACCAGTACCACTCAAGCCATAACACACACAACGAGTCAGCGTATGCCTCTAGCCTCATTAGAATATTGGCACAGTGATCTTTATGAGCATGTCGATTCCAGCATGTGGATCTCAAACTCAAACTGTGAAGATAGCGACCACTTTCAAGAATTTCAATGTTCTGAGAACCTTGAGTCGTGTTTTCACCAGTTGGACTAA 1110 0.4135 MELDREINFGLYDTPGGNGSCGSELIHGSAFNEPKFSCVSGEPLLNLRLGKRMYFDEVCPESDSKNLSFSRDLMSSLILEKKCKSNGQNLRCPPRCQVEGCGLDLSSAKDYHRNQRVCESHSKSPMVVIDGMERRFCQQCSRFHDLFEFDGKKKSCRRQLSNHNARRRKYHRQAVQSSQSALSSSRSDGKQQMSPFANSKTATNLACQNMHNIKLPQAKDFLLKPAKDNIDTPSTVTMLSHDSNFHFTSKVLATKSINPNVEDFISFSDTDDTQDFTCASSLLSTSPWDSYATKSISLAHSDRTTSTTQAITHTTSQRMPLASLEYWHSDLYEHVDSSMWISNSNCEDSDHFQEFQCSENLESCFHQLD 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g03870 369 Gene3D - 92 157 IPR036893 GO:0003677|GO:0005634
Mepo2g03870 369 MobiDBLite consensus disorder prediction 159 197 - -
Mepo2g03870 369 Pfam SBP domain 96 169 IPR004333 GO:0003677
Mepo2g03870 369 SUPERFAMILY SBT domain 94 173 IPR036893 GO:0003677|GO:0005634
Mepo2g03870 369 ProSiteProfiles Zinc finger SBP-type profile. 93 170 IPR004333 GO:0003677
Mepo2g03870 369 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 90 308 IPR044817 GO:0003677
Mepo2g03870 369 MobiDBLite consensus disorder prediction 159 173 - -
Mepo2g03870 369 MobiDBLite consensus disorder prediction 174 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g03870 Mepo-Chr2 47949038 47955563 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g03870 35 330 SBP-box Gene Family AT5G43270 36.156 1.15e-42 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Mepo2g03870 SBP 1.1e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g03870 - - mtr:25501754 520.005