Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g03851 ATGATGGATGTGGCCGCTGAGGTTGAAGAAAATCTATTTGCTGTTAGTGATGCCAAGTTACATGGACAAATGTGCAAGGCTCTTTCTGTAATCTATTGCAAAGTATTGTCAATATTTCCTTCTTTAGAAGCAGCCAGACCTAGGAGTAAAACCGGAATTCAGGCATTATGTTCATTACATGTAGCCTTGGAGAAAGCCAAGAATGTCCTTCATCATTGCTCAGTCTGTAGTAAACTTTACTTGGCTGTAACTGGGGACTCTGTTCTCCTAAAATTTGAGAAGGCTAAGTGTGCTCTTGAAGATAGTCTTAGACGGGTGGAAGATATTGTTCCACAATCCATTGGATGTCAGGTTCAGGAGATTGTGAATGAATTTGCTGATGTAGAATTTGCACTCGACCCCTTAGAGAAGCAAGTTGGCGATGATTTAATTGCATTGCTCCAGCAGGGAAAAAAGTTTGATGACGATGGTGAAAGTTATGAGCTTGAATCTTTTCACCAGGCTGCTACTAGACTTGGAATCACATCTTCAAGAGTAGCTCTTGCTGAAAGAAGGGCTTTAAAGAAACTTATTGACAGGGCTCGGGCTGAGGAAGACAAACGAAAGGAATCAATTGTTGCATATCTTTTGCATCTTATGAGGAAATACTCCAAGTTATTCAGAAATGAGTTTTCAGATGACACTGATTCTCAGGGTTCTGGTCCTTGTTCTCCCACTGTCCAGGGATCTATTGAGGATGGTGTTCCCGTTGGTCATAATCAGACCTTTGAAAGACAACTTTCGAAACTTAGTTCCTTTAATTTCAAGCCAAATAATAATATAGAGCCAGGGCAGATGGCTCTACCGCCAGAAGAGTTAAGGTGTCCAATATCTCTTCAACTTATGTATGATCCTGTTATCATTGCTTCTGGGCAAACATATGAAAAGGTTTGCATAGAGAAATGGTTTGGTGATGGGCACAGCAACTGCCCAAAGACCCAACAAAACCTTCCACATCTTTACTTGACTCCTAATTACTGTGTTAAGGGTCTTGTTGCTAGTTGGTGTGAACAAAATGGAATTCCTATTCCTGAAGGCCCTCCAGAATCACTTGATCTTAACTACTGGAGATTGGTATTATCAGAGTCTGAGTCTACAAATTCAAGATCTGGAAATAGTGTCAGCTCTTGCAAGTTGAAGGGTGTCAAAGTGGTTCCTTTAGAAGAGAGATGTATCTCAGAGGAATATGGGGAAAATGGAGCTGAAAGTACATCTGCACAAGAGGAAGACACTGAGCAGTATCTCAGTTTCCTGAAAGTCTTGACTGAGGGGAACAATTGGAAGAGGAAATATGAAGTGGTAGAACAGTTAAGGCTGTTGCTGAGGGATGATGAGGAAGCTAGGATTTTTATGGGGGCTAATGGGTTTGTTGAAGCACTTGTTCAGTTTTTACAATCAGCTGTACATGAAAAGAATTTGATTGCTCAGGAAAGCGGAGCAATGGCTCTCTTCAACCTAGCTGTGAATAACGACAGAAATAAGGAGATTATGTTATCAGCCAGAGTTTTATCTTTGTTGGAGGAAATGATTTCTGACACTAGTTCTTATGGTTGTGCAACTGCTCTGTATCTGAATCTCTCTTGCCTCGAAGAAGCCAAACCTATGATTGGCATGAGTCAGGCAGTTCAGTTCCTAACCCAGCTCCTTCAATCTGACTATGACATTCAATACAAGCAAGATTCTCTCCATGCTCTCTATAATCTTTCTACTGTGCCCTCCAATATTCCATACTTACTTTCATCTGGCATTGTTAACGGCCTACAATCCCTTCTTGTAGACCAGGGTGATGATTGTACATGGACAGAAAAATGTATAGCGGTTTTGATAAATTTAGCCACTTCTCAAGTTGGAAGGGAGGAAATGGTTTCAAATCCTGGACTCATCAGTGCATTGGCTTCCATATTGGACACTGAGGAGCTCGAAGTGCAGGAGCAAGCTGTCTCCTGTCTCCTAATTTTGTGCAACAGAAGTGAGCAATGTTCTGACATGGTCCTGCAGGAAGGAGTTATACCTGCATTGGTATCAATATCAGTGAATGGGACCCCGAGAGGGAGAGAAAAAGCTCAGAAACTCTTGATGCTGTTCCGACAGCAGCGACGGGATGAATCATCTATTGAGGCACATCAGTGTCCTCCTGAAACTAGTGATTTGTCTGTGCCACCTGCTGAAATGAAACCTCTATGTAAGTCGATGTCTAGAAGAAAGACCGGTAAACCTTTTAGCTTTTTCTGGAGAAGCAAGAGCTATTCTGTGTACCAGTGTTGA 2304 0.4184 MMDVAAEVEENLFAVSDAKLHGQMCKALSVIYCKVLSIFPSLEAARPRSKTGIQALCSLHVALEKAKNVLHHCSVCSKLYLAVTGDSVLLKFEKAKCALEDSLRRVEDIVPQSIGCQVQEIVNEFADVEFALDPLEKQVGDDLIALLQQGKKFDDDGESYELESFHQAATRLGITSSRVALAERRALKKLIDRARAEEDKRKESIVAYLLHLMRKYSKLFRNEFSDDTDSQGSGPCSPTVQGSIEDGVPVGHNQTFERQLSKLSSFNFKPNNNIEPGQMALPPEELRCPISLQLMYDPVIIASGQTYEKVCIEKWFGDGHSNCPKTQQNLPHLYLTPNYCVKGLVASWCEQNGIPIPEGPPESLDLNYWRLVLSESESTNSRSGNSVSSCKLKGVKVVPLEERCISEEYGENGAESTSAQEEDTEQYLSFLKVLTEGNNWKRKYEVVEQLRLLLRDDEEARIFMGANGFVEALVQFLQSAVHEKNLIAQESGAMALFNLAVNNDRNKEIMLSARVLSLLEEMISDTSSYGCATALYLNLSCLEEAKPMIGMSQAVQFLTQLLQSDYDIQYKQDSLHALYNLSTVPSNIPYLLSSGIVNGLQSLLVDQGDDCTWTEKCIAVLINLATSQVGREEMVSNPGLISALASILDTEELEVQEQAVSCLLILCNRSEQCSDMVLQEGVIPALVSISVNGTPRGREKAQKLLMLFRQQRRDESSIEAHQCPPETSDLSVPPAEMKPLCKSMSRRKTGKPFSFFWRSKSYSVYQC 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g03851 767 Gene3D - 547 715 IPR011989 -
Mepo2g03851 767 SMART arm_5 542 583 IPR000225 GO:0005515
Mepo2g03851 767 SMART arm_5 627 668 IPR000225 GO:0005515
Mepo2g03851 767 SMART arm_5 457 501 IPR000225 GO:0005515
Mepo2g03851 767 SUPERFAMILY ARM repeat 430 710 IPR016024 -
Mepo2g03851 767 ProSiteProfiles U-box domain profile. 281 355 IPR003613 GO:0004842|GO:0016567
Mepo2g03851 767 SMART Ubox_2 285 348 IPR003613 GO:0004842|GO:0016567
Mepo2g03851 767 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 355 IPR013083 -
Mepo2g03851 767 Gene3D - 419 546 IPR011989 -
Mepo2g03851 767 CDD RING-Ubox_PUB 283 335 IPR045210 -
Mepo2g03851 767 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 468 514 IPR000225 GO:0005515
Mepo2g03851 767 FunFam RING-type E3 ubiquitin transferase 281 355 - -
Mepo2g03851 767 Pfam U-box domain 283 352 IPR003613 GO:0004842|GO:0016567
Mepo2g03851 767 SUPERFAMILY RING/U-box 281 357 - -
Mepo2g03851 767 PANTHER U BOX DOMAIN-CONTAINING 23 712 - -
Mepo2g03851 767 MobiDBLite consensus disorder prediction 716 735 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g03851 Mepo-Chr2 47740214 47745282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g03851 2 766 U-box Gene Family AT1G24330 65.385 0.0 1003
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g03851 - - gmx:100794099 1260.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo2g03851 2 47740214 47745282 Mepo2g03851 2 47740214 47745282 ECH
Mepo3g06228 3 76461516 76466530 Mepo2g03851 2 47740214 47745282 PCT