Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g03675 ATGGCTGAAAATAATTCTCATTCTCACTCTCAATCTCCCATACCATGTGACAACCACCATGATCATGAACAAGTAGGTGGTTTTGATTGGATGGTTCTTGTAGCAGCTATATTATGTGCCATTGTTTGTGCTCTTGGTCTTAACACAATGTTACAATGTGCTTTTCAATGTCTTGGTCGTGTAGTTACTGAGCCTATGCAATGGATTGCTTCTAGGAAGTTGAATTCCGGAATCAAGAAGAAAGAAATGGTAACTTTACCAACTTCAATATATAGTCATGACTCAGGTTCTCCATCTTCAACTTCTAGTTGTGTCATTTGTTTAGCTGATTTCTGTAATGGAGACCAGATAAGGTTCTTACCAAAATGCAATCATCATTTCCATGTGGTTTGTATTGATAAGTGGTTGTTATCTCATTCTTCTTGTCCTACTTGCAGGAATCTTACTCAAGTCTAG 456 0.375 MAENNSHSHSQSPIPCDNHHDHEQVGGFDWMVLVAAILCAIVCALGLNTMLQCAFQCLGRVVTEPMQWIASRKLNSGIKKKEMVTLPTSIYSHDSGSPSSTSSCVICLADFCNGDQIRFLPKCNHHFHVVCIDKWLLSHSSCPTCRNLTQV 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g03675 151 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Mepo2g03675 151 SMART ring_2 104 145 IPR001841 -
Mepo2g03675 151 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 150 IPR013083 -
Mepo2g03675 151 Pfam Ring finger domain 103 146 IPR001841 -
Mepo2g03675 151 SUPERFAMILY RING/U-box 103 148 - -
Mepo2g03675 151 PANTHER RING-H2 FINGER PROTEIN ATL78 15 147 IPR044602 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g03675 Mepo-Chr2 46120233 46121042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g03675 29 146 C3H Transcription Factor Family AT3G10910 41.270 3.04e-30 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g03675 - - tpra:123918739 269.24