Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g03633 ATGGGTCGTAAGAAAATAGAGATAGAATTAGTGGATAACAAGAAGGCTAGGAATGTCACATTTTCAAAGAGAAGAAGTGGTCTTTTTAAGAAAGCAAGCGATTTATCAATTCTTTGTAATGCTAGAGTTGGTATAGTTGGATTTACCCCTGGTGGTAAACCATTTGCTTTTGGTTCTCCAACTTTCGAAGCTGTGACCAATGAGTACCTTCATGGAGAACAAGGTGAATCATCAAAAAAAAATGTTAAGCCTTGTCGAAATCAAAACATCAACAAGCTCAACAAAGAACTGAGTGATTTGACCGAAGAGTTGGAGGAAGTTGACAAAGGTAAAGCCTCTATGGTACCTACTGATCTTGACTTAGAAGAACTTCTAAAAGTGAAGGCATCATTGAAAGATCTCCATGGTAACATTGAGGCAGCATCATCTTTGCTTCTCCTTGCTAAGAAACCTATACACATCATTGATTTAGATTGTAAAAGAAAGGGAAAATCCAATGTTATGGAAACTAATTATTAA 519 0.3622 MGRKKIEIELVDNKKARNVTFSKRRSGLFKKASDLSILCNARVGIVGFTPGGKPFAFGSPTFEAVTNEYLHGEQGESSKKNVKPCRNQNINKLNKELSDLTEELEEVDKGKASMVPTDLDLEELLKVKASLKDLHGNIEAASSLLLLAKKPIHIIDLDCKRKGKSNVMETNY 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g03633 172 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mepo2g03633 172 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mepo2g03633 172 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mepo2g03633 172 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Mepo2g03633 172 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Mepo2g03633 172 Gene3D - 13 90 IPR036879 GO:0003677|GO:0046983
Mepo2g03633 172 FunFam Agamous-like MADS-box protein AGL62 13 79 - -
Mepo2g03633 172 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mepo2g03633 172 Coils Coil 87 110 - -
Mepo2g03633 172 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mepo2g03633 172 PANTHER MADS BOX PROTEIN 3 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g03633 Mepo-Chr2 45680089 45680667 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g03633 1 150 Type I MADS-box Gene Family AT2G34440 39.773 1.94e-32 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mepo2g03633 SRF-TF 2.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g03633 - - mtr:25493407 228.024