LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mepo2g03542	ATGTCAGACGAGGATGAGTATCGTTGTTTTGTTGGTGGCCTTGCTTGGTCAACATCTGATAGAAAGTTAAGAGATACATTTGAAAAGTTTGGCAAGCTTACAGAGGCCAAGGTGGTTGTTGACAAATTCTCTGGACGCTCTCGTGGTTTTGGATTTGTCACATATGATGAAAAGAAAGCAATGGAAGATGCTATTGATGCTATGAATGGGATAGATTTAGATGGCCGAACTATTACTGTTGATAGAGCTCAGCCTCAACAAGGATCCGCTAGAGATGATGGTGATCGCCACCGAGAGCGTGGTCGCGACCGTGAACGTGATCGAGATTACCGAGGTGGTCGAGGATCTAATGATGGAGGATGCTTCAATTGTGGTAAACCTGGTCATTTTGCTAGGGAGTGCCCTAGTGGTGAAGGGGGAAGAGGGGGAGGGGGAAGGTATGGTGGTAGAGAAAGTAGATATGGTGGAAGTGGTGGTGGTGGTCACTATGGTCCAGATAGAAATGGAGATCGTTCTTCTGGCGGTCGCAGCAGGGATGGTGGTAGTCGTGGAGATTCTGGAAGTGATCGATACTATCGTGACCGTGATCGTGCTGGACCATATGAACGACGTGGATCTGGAGGCGGCTATCGTTGA	636	0.4811	MSDEDEYRCFVGGLAWSTSDRKLRDTFEKFGKLTEAKVVVDKFSGRSRGFGFVTYDEKKAMEDAIDAMNGIDLDGRTITVDRAQPQQGSARDDGDRHRERGRDRERDRDYRGGRGSNDGGCFNCGKPGHFARECPSGEGGRGGGGRYGGRESRYGGSGGGGHYGPDRNGDRSSGGRSRDGGSRGDSGSDRYYRDRDRAGPYERRGSGGGYR	211

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mepo2g03542	211	Gene3D	-	117	178	-	-
	Mepo2g03542	211	MobiDBLite	consensus disorder prediction	169	202	-	-
	Mepo2g03542	211	CDD	RRM2_NsCP33_like	8	83	-	-
	Mepo2g03542	211	Pfam	Zinc knuckle	120	136	IPR001878	GO:0003676\|GO:0008270
	Mepo2g03542	211	Gene3D	-	1	116	IPR012677	-
	Mepo2g03542	211	SUPERFAMILY	RNA-binding domain, RBD	3	115	IPR035979	GO:0003676
	Mepo2g03542	211	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	7	85	IPR000504	GO:0003723
	Mepo2g03542	211	SMART	rrm1_1	8	81	IPR000504	GO:0003723
	Mepo2g03542	211	SMART	c2hcfinal6	120	136	IPR001878	GO:0003676\|GO:0008270
	Mepo2g03542	211	ProSiteProfiles	Zinc finger CCHC-type profile.	121	136	IPR001878	GO:0003676\|GO:0008270
	Mepo2g03542	211	MobiDBLite	consensus disorder prediction	76	211	-	-
	Mepo2g03542	211	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	10	79	IPR000504	GO:0003723
	Mepo2g03542	211	SUPERFAMILY	Retrovirus zinc finger-like domains	103	141	IPR036875	GO:0003676\|GO:0008270
	Mepo2g03542	211	MobiDBLite	consensus disorder prediction	88	114	-	-
	Mepo2g03542	211	PANTHER	GLYCINE-RICH RNA-BINDING PROTEIN RZ1A	1	205	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mepo2g03542	Mepo-Chr2	44945867	44948919	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mepo2g03542	9	84	Eukaryotic Initiation Factors Gene Family	AT4G34110	38.158	1.17e-07	49.7

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mepo2g03542	-		-	gmx:100815224	218.394