Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g03531 ATGAACAACAGCAAGATGAAGAAGGTTTCGAAGTTGAGGACTTCGAACGAGAACGTTTCGCCATTGATGATGGAGTTGGATGATAACAGAGGACTACGTTATCTCCAATCAACAACGATGAGTCCAGGTTTTCAACCCTACGCCGCCGAGAACTTCGACGTTACCGGCTCGCCGTCGAGCCTCGCTAAATACTTCTACACTGTATCTCCGATTTCTGCTAAATCCAGTGACTCCTTCGCTTCTCCGATTTATGGCTCCAGTAAGTACAGGTCAGCAAAAACGCCACCGTACTCCGGTAACAGTTCAGGGGGGAATAGTAGCTTCAGTTCTCGCGGTAGATTGTCTCTCTCGCCGCTCTCTTCAATTGAGAATTTGGAGAGGAAGCAGCTCTCGTCGCCGCGGATGTATCAAACCCCGGTGAAGGGTGGTGAGGAAGTTATTGTGATGGATGATATTCAGGTGAGGCCAATGTCAGGAGGAAAGAACAGAAGATCTTCATCATCATCTTCTTCCGGTAGAGGCTCTTCATCTTCCTCTTCTTCGTCTTCGAAGAGTGTGTTGTTTAAGAAGGAGATTTGCAGAGCATGGGAGGAATCTGGAAACTGCCGCTATAACTCCAAATGCCAGTTTGCCCACGGAAGAGAAGAGCTTCATCCAAGTCGTCTCTCCATGAAGAGTAAATCTGAGGCACAGATGGGCAGATTATCTCCGAGAGCAGGACTGTGCTTGTATGGCCCAGATAGCTGCATTGTTTCTGAATCCGCTGAAGTAGCTGAATCTGGACCTGTAGTCACAATCACAAGACTTGCAAGAACCCAACCAGCTTCGCCTGAACCTCATTGCACTAATGCCAGCCAGGTTAGCCGCATTGTTCCTGAATCCGCTGAAGTAGCTGAATCTGGACCTGTTGTCACAAGACTTGCAAGATCCGAACTAGCTTCGCCTGAACCTCATCACACTCATGCCAATTCCAACACTATCAGCGACTGGTCACCCCTGGATGATGGCATTGAGGCTGTCCTCCCAAATGGTTCAGACAGAGTTCCCTCTAGGGAGGAAGTTGATGCATACATTTTCGGCATTCTCAATAAGCCGACCACTAAAAGAAGACTACCAGTTTTTGCAGCACTTTGCGAGGGGCAGCAATCTCCATGA 1155 0.4848 MNNSKMKKVSKLRTSNENVSPLMMELDDNRGLRYLQSTTMSPGFQPYAAENFDVTGSPSSLAKYFYTVSPISAKSSDSFASPIYGSSKYRSAKTPPYSGNSSGGNSSFSSRGRLSLSPLSSIENLERKQLSSPRMYQTPVKGGEEVIVMDDIQVRPMSGGKNRRSSSSSSSGRGSSSSSSSSSKSVLFKKEICRAWEESGNCRYNSKCQFAHGREELHPSRLSMKSKSEAQMGRLSPRAGLCLYGPDSCIVSESAEVAESGPVVTITRLARTQPASPEPHCTNASQVSRIVPESAEVAESGPVVTRLARSELASPEPHHTHANSNTISDWSPLDDGIEAVLPNGSDRVPSREEVDAYIFGILNKPTTKRRLPVFAALCEGQQSP 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g03531 384 MobiDBLite consensus disorder prediction 1 22 - -
Mepo2g03531 384 MobiDBLite consensus disorder prediction 159 184 - -
Mepo2g03531 384 SMART c3hfinal6 187 214 IPR000571 GO:0046872
Mepo2g03531 384 MobiDBLite consensus disorder prediction 125 184 - -
Mepo2g03531 384 MobiDBLite consensus disorder prediction 317 331 - -
Mepo2g03531 384 FunFam zinc finger CCCH domain-containing protein 15-like 181 220 - -
Mepo2g03531 384 SUPERFAMILY CCCH zinc finger 186 218 IPR036855 GO:0046872
Mepo2g03531 384 MobiDBLite consensus disorder prediction 311 331 - -
Mepo2g03531 384 ProSiteProfiles Zinc finger C3H1-type profile. 187 215 IPR000571 GO:0046872
Mepo2g03531 384 Gene3D - 179 220 - -
Mepo2g03531 384 PANTHER CCCH ZINC FINGER/TIS11-RELATED 85 288 IPR045877 GO:0003729
Mepo2g03531 384 MobiDBLite consensus disorder prediction 89 113 - -
Mepo2g03531 384 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 188 214 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g03531 Mepo-Chr2 44840627 44845822 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g03531 187 245 C3H Transcription Factor Family AT1G68200 38.983 1.38e-06 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mepo2g03531 zf-CCCH 3.1e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g03531 - K18753 gmx:102665928 237.269