Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g03474 ATGACTAGAAAGAAGATACAGATCAAGAAAATCGACAATATCAGTTCGAGGCAAGTGACTTTCTCTAAGAGGAGGAAAGGGCTTTTCAAGAAAGCTCAGGAGCTTTCAACCCTTTGTGATGCAGACATTGCCCTTATGGTTTTTTCTGCAACTAGTAAGCTCTTTGAGTATGCTAGTTCAAGTATGCCACAAGTAATTGAAAGGCGTAATGGATATTCAGCAAATCATAGATTATTAGACCATCCATCGACTGATCAGCTTCAGGTTGAGAGTGACTCTACTTGCGACACACTGCGCAAGAAATTAGAAGATAAATCTCGTGAACTGAGGCAATTGAATGGAGAAGATCTGCAAGAATTGACAGTACAAGAACTCCAGAAACTAGAGGCTCTACTTAAAAGAAGTTTGTCTAGTGTTTCCAAAATAAAGGATGAAATGTTTATGCAAGAGATCGACACCCTTAAGAGAAAGGAAGTGGAACTGATCGAAGAAAACCGAAGATTAAAACATGTGGTACCAGACCTTATAAATGGACGATGGCGACAATCATTGGAATCTGTTATTAGGGATTCATCTTTTTCTCCTGAAGACGATGTCAGTGACACTTCTCTCAAGTTGGGGTTACCATTTCTTAAATAA 639 0.3897 MTRKKIQIKKIDNISSRQVTFSKRRKGLFKKAQELSTLCDADIALMVFSATSKLFEYASSSMPQVIERRNGYSANHRLLDHPSTDQLQVESDSTCDTLRKKLEDKSRELRQLNGEDLQELTVQELQKLEALLKRSLSSVSKIKDEMFMQEIDTLKRKEVELIEENRRLKHVVPDLINGRWRQSLESVIRDSSFSPEDDVSDTSLKLGLPFLK 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g03474 212 Coils Coil 125 145 - -
Mepo2g03474 212 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Mepo2g03474 212 FunFam Transcription factor, MADS-box 13 83 - -
Mepo2g03474 212 Pfam K-box region 91 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mepo2g03474 212 SUPERFAMILY SRF-like 2 88 IPR036879 GO:0003677|GO:0046983
Mepo2g03474 212 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mepo2g03474 212 CDD MADS_MEF2_like 3 77 IPR033896 GO:0000977|GO:0045944
Mepo2g03474 212 ProSiteProfiles K-box domain profile. 88 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mepo2g03474 212 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mepo2g03474 212 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mepo2g03474 212 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mepo2g03474 212 Coils Coil 95 115 - -
Mepo2g03474 212 Coils Coil 151 171 - -
Mepo2g03474 212 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 148 - -
Mepo2g03474 212 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mepo2g03474 212 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mepo2g03474 212 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g03474 Mepo-Chr2 44368943 44381534 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g03474 1 209 MADS-box Gene Family AT4G24540 48.858 1.63e-59 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mepo2g03474 K-box 3e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g03474 - - aprc:113860188 289.271