Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g03459 ATGGAAATGCTGAATTCGTCTGAGAACGGATTAATGGCCATGCACTGTACCAATGTAGCTTCCGTTTCTGACGAAGGTGAAGAACCTCAACCCATTACTGCTTCTGTTCCACTCTCTCGTGCTAGCGAACTAACCATTTCCTTTGAAGGCGAGGTTTATGTTTTCCCTTCCGTTACGCCAGAAAAGGTGCAGGCTGTATTGTTACTCTTAGATGGGCAGGAGACATGCAATAGCGTACTCGCTTCTGACTTTTCGGTGCAGCAAAACTGTCGGGACATTTGGGGGAAAAATGATCCTTTCCATAATTCAAAGCTTTCACGGAGATCTGCATCACTTGTTAGGTTTCGTGAAAAACGAAAAGAGAGATGTTTTGAGAAGAAAATCCGCTACACTTGCCGTAAGGAGGTTGCTGAGAGGATGCAACGAAAGAATGGACAGTTTGCATCGTTGAAGGAAGAATGCAGTTCTCCTGTTGAAAACCAGGATTCTAGCAATGGTACTCCTTCCCCAGAATCCATTGAACGTAGATGCCAGCATTGTGGAGTTGGTGCGAAGTCTACTCCAGTAATGCGTCGAGGACCGGCTGGTCCAAGAACTCTATGCAATGCTTGCGGGCTCACTTGGGCAAATAAGGGAACTCTGAGAGATCTCGGCAAAGCAGGAAGGATTGCTTTTGAACGGAATGAACTGGATACTTCAACAACAGAGCCAGAAAATTCATGTGCTGCACAGGACAAGAAGGAAAGCCCCCATGAAACAAAGCCTTTGCCAATGGATGCCAGACAGTCACCCGAGATGATAATTGAGCAGTATATGCTCGAAGCTGCTGAAGCAGTTACTGACAACTTGTCCATCCAAGTGGAGAATAATGCTCTTGATCTGCACGAGCAGGATAATACTATGGAGGATTTTGTTGATGCTTCTGGGACTGAATTTGAGATTCCTTTATGTTTTGATGATCAGGTCGATATTGATGATTCCAATATGAGGACTTACTGGTTGTGA 1005 0.4507 MEMLNSSENGLMAMHCTNVASVSDEGEEPQPITASVPLSRASELTISFEGEVYVFPSVTPEKVQAVLLLLDGQETCNSVLASDFSVQQNCRDIWGKNDPFHNSKLSRRSASLVRFREKRKERCFEKKIRYTCRKEVAERMQRKNGQFASLKEECSSPVENQDSSNGTPSPESIERRCQHCGVGAKSTPVMRRGPAGPRTLCNACGLTWANKGTLRDLGKAGRIAFERNELDTSTTEPENSCAAQDKKESPHETKPLPMDARQSPEMIIEQYMLEAAEAVTDNLSIQVENNALDLHEQDNTMEDFVDASGTEFEIPLCFDDQVDIDDSNMRTYWL 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g03459 334 Coils Coil 133 153 - -
Mepo2g03459 334 CDD ZnF_GATA 176 219 IPR000679 GO:0006355|GO:0043565
Mepo2g03459 334 Pfam GATA zinc finger 177 213 IPR000679 GO:0006355|GO:0043565
Mepo2g03459 334 ProSiteProfiles Tify domain profile. 37 72 IPR010399 -
Mepo2g03459 334 PANTHER GATA TRANSCRIPTION FACTOR 28 15 313 IPR045280 GO:0006355
Mepo2g03459 334 Gene3D - 170 229 IPR013088 GO:0006355|GO:0008270
Mepo2g03459 334 SMART GATA_3 171 224 IPR000679 GO:0006355|GO:0043565
Mepo2g03459 334 SMART tify_2 37 72 IPR010399 -
Mepo2g03459 334 MobiDBLite consensus disorder prediction 241 255 - -
Mepo2g03459 334 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 173 228 - -
Mepo2g03459 334 ProSiteProfiles GATA-type zinc finger domain profile. 171 227 IPR000679 GO:0006355|GO:0043565
Mepo2g03459 334 MobiDBLite consensus disorder prediction 228 261 - -
Mepo2g03459 334 Pfam tify domain 41 70 IPR010399 -
Mepo2g03459 334 Pfam CCT motif 108 149 IPR010402 GO:0005515
Mepo2g03459 334 ProSiteProfiles CCT domain profile. 108 150 IPR010402 GO:0005515
Mepo2g03459 334 MobiDBLite consensus disorder prediction 148 174 - -
Mepo2g03459 334 ProSitePatterns GATA-type zinc finger domain. 177 204 IPR000679 GO:0006355|GO:0043565
Mepo2g03459 334 MobiDBLite consensus disorder prediction 148 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g03459 Mepo-Chr2 44261333 44265958 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g03459 40 220 Tify Gene Family AT1G51600 56.316 6.82e-59 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mepo2g03459 CCT 1.2e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g03459 - - mtr:11405700 622.468