Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g03438 ATGGGGAGAGGAAAGATTGTGATTCGAAGGATTGAGAATTTGATTAGCAGGCAAGTGACTTTCTCAAAGAGAAGAAAAGGGTTGATGAAGAAAGCTAAAGAACTATCCATTCTTTGTGATGCGCAAGTTGGATTGATTTTGTTCTCCTCTACTCACAAGCTTTATGACTATGCAAGTTCCAGCATGCAGTCAGTGATCGAGCGTTATAACAAGTTAGTAGGGGACCATCATCAAGCAATGGATCCTACTTTGGAACTCAAGTTTTGGCAAAGAGAAGCAGCAAGCTTGAGGCAACAATTGCAGCACTTGAATGATAGCCAAAGGCAATTGATGGGCCAAGAACTATCTGGTTTGGATTTAAATGAGCTGCAGCATCTAGAAAGTCAATTGGAGATGAGTTTGAAAAGCATTCGCACGAGAAAGGGTTATACTTTTAGTGATGAGATCAATGAATTACTCAAAAAGGGAAGCCTTAGTAGTCAAGAAAATGAAGATCTTCATAAGAAGATAGACCTCATTGGTGAGAAAAATGCAGAACTAGAGAAGATCATTGGAGCAAGGCGTAGGGAATATGCAACATCCAATGCTTCACACAGTACTATCAGCTATGGATATGATATGCATGATGAGCCAATCAGTCTTCAGCTAAGGCCGCCACAACCGCAACAGTGA 672 0.4077 MGRGKIVIRRIENLISRQVTFSKRRKGLMKKAKELSILCDAQVGLILFSSTHKLYDYASSSMQSVIERYNKLVGDHHQAMDPTLELKFWQREAASLRQQLQHLNDSQRQLMGQELSGLDLNELQHLESQLEMSLKSIRTRKGYTFSDEINELLKKGSLSSQENEDLHKKIDLIGEKNAELEKIIGARRREYATSNASHSTISYGYDMHDEPISLQLRPPQPQQ 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g03438 223 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mepo2g03438 223 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mepo2g03438 223 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mepo2g03438 223 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mepo2g03438 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mepo2g03438 223 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 164 - -
Mepo2g03438 223 Coils Coil 86 113 - -
Mepo2g03438 223 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mepo2g03438 223 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677|GO:0046983
Mepo2g03438 223 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mepo2g03438 223 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Mepo2g03438 223 Gene3D - 15 109 IPR036879 GO:0003677|GO:0046983
Mepo2g03438 223 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mepo2g03438 223 Pfam K-box region 85 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g03438 Mepo-Chr2 44081473 44097911 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g03438 1 220 MADS-box Gene Family AT2G22630 50.893 6.48e-71 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mepo2g03438 K-box 1.1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g03438 K09264 - tcc:18608170 275.404