Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mepo2g03389 | ATGGCGACCAATCTCCCAGAACACTTCAAATGTCCAATCTCACTCGAAATAATGTCCGACCCAGTCATCCTCTCTTCCGGTCATACATTCGATCGTCCTTCAATCCAACGTTGGCTTGACGAAGGTCATCGTACTTGTCCAATTACCAAACTACCCCTTCCTGATTCTCCTATCCTCATCCCGAACCACGCGCTTCGTAGTTTAATCTCTAGTTACACACTCCTTCCACCACTTCATCAAATCATTTCACAACCTGAAACCCTAATTTCAACCCTAATTTTGAATTCTTCTTCTTCCGATTCCAAAATTGACTCACTTCGTCAACTCGCTCGTCTTTCTAAACGTGATGCCAGTTTCCGTCGCCGTCTTGTTGATTCCGGTGCCGTCTCCGCCGTGCTTTTCTGTCTTGATTCCTCTTCCTCTTCTTCTTCTTCTTCCGGTAACGTTAAGTTGCAGGAGAAGGCTCTGTCTCTTCTTCTTAATCTTAGTCTTGATGATGATAGCAAAATTGGTCTTGTTGCAGAAGGAGCAATTGACCGGGTTGTGAATTTTCTAGTCGGAGTAGCTTCGTCGGATTGTCGTGCTTTGGCGGCGACGATAATCACGAGTCTTGCTGTTGTGGAGGTGAATAAAGCAACAATCGGAGCTTTTCCTGGCGCAATTGAAGCTCTGGTGATGATTCTACGTGATGGGAAAGGGAGAGAAAAGAAGGAAGCTGCCACCGCGCTTTACGCGCTTTGTTGTTTTAGGGATAATCGAAAAAGGGCGGTGGATTGTGGCGCGGTGCCGATTTTGTTAAGAAATGTTGAATGTGGACTTGAGAGGGGTGTTGAGGTGATTGGTGTTTTGGCGAAATGTAAGGAAGGGAGGGAACAATTGGAGAGTTATGGTGGTTGTGTGAAGATTTTGGTGAGTGTTTTGAGGAATGGAAGTTCTAGAGGGATTCAATATGCATTGTTGGCACTTACTTTGGTTTGTTTGCATAGCAAGGAAATACTTTTGATGACTCTGCAAGAAGGGGTTTTGGAAATTTGTATTGGGTTGGTAGAGGATGATAGTGAGAAAGTTAGGAGAAATGCGTCTAATCTGATTCGGGTTCTTCGCGGAGGAAACCACCACCGGATCAGTTGA | 1131 | 0.4509 | MATNLPEHFKCPISLEIMSDPVILSSGHTFDRPSIQRWLDEGHRTCPITKLPLPDSPILIPNHALRSLISSYTLLPPLHQIISQPETLISTLILNSSSSDSKIDSLRQLARLSKRDASFRRRLVDSGAVSAVLFCLDSSSSSSSSSGNVKLQEKALSLLLNLSLDDDSKIGLVAEGAIDRVVNFLVGVASSDCRALAATIITSLAVVEVNKATIGAFPGAIEALVMILRDGKGREKKEAATALYALCCFRDNRKRAVDCGAVPILLRNVECGLERGVEVIGVLAKCKEGREQLESYGGCVKILVSVLRNGSSRGIQYALLALTLVCLHSKEILLMTLQEGVLEICIGLVEDDSEKVRRNASNLIRVLRGGNHHRIS | 376 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mepo2g03389 | 376 | Gene3D | - | 71 | 188 | IPR011989 | - | |
| Mepo2g03389 | 376 | ProSiteProfiles | U-box domain profile. | 4 | 79 | IPR003613 | GO:0004842|GO:0016567 | |
| Mepo2g03389 | 376 | CDD | RING-Ubox_PUB | 6 | 56 | IPR045210 | - | |
| Mepo2g03389 | 376 | Gene3D | - | 189 | 275 | IPR011989 | - | |
| Mepo2g03389 | 376 | PANTHER | U BOX DOMAIN-CONTAINING | 5 | 366 | - | - | |
| Mepo2g03389 | 376 | SUPERFAMILY | RING/U-box | 3 | 73 | - | - | |
| Mepo2g03389 | 376 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 70 | IPR013083 | - | |
| Mepo2g03389 | 376 | FunFam | RING-type E3 ubiquitin transferase | 4 | 75 | - | - | |
| Mepo2g03389 | 376 | Pfam | U-box domain | 6 | 72 | IPR003613 | GO:0004842|GO:0016567 | |
| Mepo2g03389 | 376 | SMART | arm_5 | 116 | 164 | IPR000225 | GO:0005515 | |
| Mepo2g03389 | 376 | SMART | arm_5 | 286 | 327 | IPR000225 | GO:0005515 | |
| Mepo2g03389 | 376 | SMART | arm_5 | 165 | 206 | IPR000225 | GO:0005515 | |
| Mepo2g03389 | 376 | SMART | arm_5 | 329 | 369 | IPR000225 | GO:0005515 | |
| Mepo2g03389 | 376 | Gene3D | - | 276 | 374 | IPR011989 | - | |
| Mepo2g03389 | 376 | SUPERFAMILY | ARM repeat | 96 | 367 | IPR016024 | - | |
| Mepo2g03389 | 376 | SMART | Ubox_2 | 8 | 72 | IPR003613 | GO:0004842|GO:0016567 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mepo2g03389 | Mepo-Chr2 | 43569950 | 43571508 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mepo2g03389 | 1 | 369 | U-box Gene Family | AT4G21350 | 58.466 | 1.12e-140 | 403 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mepo2g03389 | - | - | gmx:100785141 | 499.204 |