Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g03342 ATGAACGACTTGTTCTCAAATTCGTTCAAAAAGTACACTGATTTGAAGGAACAAGCTTACCTTGATGATGTGGAGGCAGGGAATAAAGAAACTGTCAATCTCGATAAATTCTTCGAAGATGTTGAGAATATAAAAGAAGACATGAAAACAATTGAACAATTGTATAGGAAATTGAAAGAGGCTAATGAAGAAAGTAAAACCGTGCACAATGCTAAAACCATGAAAGAACTTCGAGGGCGAATGGACAAAGATGTTGAACAAGTCCTTAAACGTGTCAAAATCATTAAAGGAAAACTCGAAGCATTGGATCGTTCAAATGCAGCTAATAGAAACATTCCAGGGTGTGGTCCAGGTTCATCGGCAGATAGAACTAGAACTTCAGTGGTTAGTGGTTTAGGGAAGAAACTCAAAGATATGATGGATGATTTTCAAGGTTTGAGAGCAAGAATGCAACTTGAGTATAAGGAAACGGTGGAACGGAGATATTTTACAATAACGGGAGAGAAAGCGGATGAAGAAACTATAGAGAATTTGATATCAAGTGGAGAAAGTGAAAATTTCATGCAAAGGGCAATTCAAGAACAAGGTAGGGGTCAAATAATGGATACTATTTCGGAAATTCAAGAAAGACATGATGCTGTTAAGGAAATTGAGAAGAATTTGATTGAGTTGCATCAAGTGTTTTTGGATATGGCAGCTTTGGTAGAGTCTCAAGGCCAACAACTTAATAATATAGAAAGTCATGTTGCACATGCTAGTTCTTTTGTAAGAAGAGGGACAGAACAACTTCAGGAAGCTAGAGTGCAACAAAAGAATTCTAGAAAATGGACATGTTATGCCATAATTCTTGGTATTGTTCTAGTTGTTGTGCTTTTGTTTCCTCTCTTGACATCACTTTTACCTCATTTGATAAAGTGA 918 0.3649 MNDLFSNSFKKYTDLKEQAYLDDVEAGNKETVNLDKFFEDVENIKEDMKTIEQLYRKLKEANEESKTVHNAKTMKELRGRMDKDVEQVLKRVKIIKGKLEALDRSNAANRNIPGCGPGSSADRTRTSVVSGLGKKLKDMMDDFQGLRARMQLEYKETVERRYFTITGEKADEETIENLISSGESENFMQRAIQEQGRGQIMDTISEIQERHDAVKEIEKNLIELHQVFLDMAALVESQGQQLNNIESHVAHASSFVRRGTEQLQEARVQQKNSRKWTCYAIILGIVLVVVLLFPLLTSLLPHLIK 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g03342 305 CDD SNARE_syntaxin1-like 203 265 - -
Mepo2g03342 305 FunFam Syntaxin 132 197 297 - -
Mepo2g03342 305 Pfam Syntaxin 36 239 IPR006011 GO:0016020
Mepo2g03342 305 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 204 266 IPR000727 -
Mepo2g03342 305 SMART SynN_4 29 155 IPR006011 GO:0016020
Mepo2g03342 305 PANTHER SYNTAXIN 41 286 IPR045242 -
Mepo2g03342 305 Pfam SNARE domain 241 292 IPR000727 -
Mepo2g03342 305 SUPERFAMILY t-snare proteins 33 259 IPR010989 GO:0016020|GO:0016192
Mepo2g03342 305 Gene3D - 34 161 - -
Mepo2g03342 305 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 31 161 - -
Mepo2g03342 305 ProSitePatterns Syntaxin / epimorphin family signature. 210 249 IPR006012 GO:0005484|GO:0006886|GO:0016020
Mepo2g03342 305 SMART tSNARE_6 199 266 IPR000727 -
Mepo2g03342 305 CDD SynN 34 191 IPR006011 GO:0016020
Mepo2g03342 305 Gene3D - 193 296 - -
Mepo2g03342 305 Coils Coil 34 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g03342 Mepo-Chr2 43071308 43072225 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g03342 1 304 SNARE and Associated Proteins AT1G61290 77.961 3.21e-179 495
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g03342 K08486 - gmx:100805869 500.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo2g03342 2 43071308 43072225 Mepo2g03342 2 43071308 43072225 ECH
Mepo2g03342 2 43071308 43072225 Mepo6g00356 6 3669629 3671096 PCT