Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g03285 ATGGCTTTTGAGCATGAAGACTTCTTTACCGAAGAATGGAAAGCCATTCCAAATTCTGGCACAGAAACAGAAAAAATTTGTGACAGTTGTTTTGATTGCAACATCTGCTTAGACTTTGCTCATGAACCAGTAGTCACACTCTGTGGTCACCTTTACTGCTGGTCCTGTATTTACAAATGGCTCTTTGTGCAAAGTGCCTCTCTTGCACCTGATGAGCCACCACAGTGTCCAGTTTGCAAGGATGGCATATCTCACACCAAAATGGTCCCTCTCTATGGCAGGGGCCAGACCCTTTCTCGCTGTGATCGCGACAGTGACGGAAAACCTACCCTTGAAGATATTTCTATACCACCAAGACCACCTGCTTCACAGATTCAATCTCTATTAGCAATGGCAACATCGCCTCAAAATCGAAGTCGTCAGCAGCTTCCATATCGGAATCCTTATCAGACTCAACATATTGATTCTCCTACATACCAAGAAAATGACAGACCACAAATGCATAATCTTAATACCTTTATGACACCATTATTCCCTCAATTTGTCTTTGGCAACTCAGAAAATTCACATCATATGGTGGGAAATAGTAGTAGCCCTAGGTGGAGAAGGCAAGAGATGTTGGCAAACAAATCACTGAACAGAATTTCTTTTTTTCTCTTTTTATGCTTTGTCCTGTGTTTTATTCTCTTTTGA 693 0.4156 MAFEHEDFFTEEWKAIPNSGTETEKICDSCFDCNICLDFAHEPVVTLCGHLYCWSCIYKWLFVQSASLAPDEPPQCPVCKDGISHTKMVPLYGRGQTLSRCDRDSDGKPTLEDISIPPRPPASQIQSLLAMATSPQNRSRQQLPYRNPYQTQHIDSPTYQENDRPQMHNLNTFMTPLFPQFVFGNSENSHHMVGNSSSPRWRRQEMLANKSLNRISFFLFLCFVLCFILF 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g03285 230 ProSitePatterns Zinc finger RING-type signature. 48 57 IPR017907 -
Mepo2g03285 230 MobiDBLite consensus disorder prediction 101 121 - -
Mepo2g03285 230 SUPERFAMILY RING/U-box 28 92 - -
Mepo2g03285 230 MobiDBLite consensus disorder prediction 136 163 - -
Mepo2g03285 230 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 11 226 IPR045103 GO:0005783|GO:0006511|GO:0061630
Mepo2g03285 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 97 IPR013083 -
Mepo2g03285 230 ProSiteProfiles Zinc finger RING-type profile. 33 80 IPR001841 -
Mepo2g03285 230 SMART ring_2 33 79 IPR001841 -
Mepo2g03285 230 Pfam Zinc finger, C3HC4 type (RING finger) 33 79 IPR018957 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g03285 Mepo-Chr2 42547731 42548901 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g03285 5 216 C3H Transcription Factor Family AT4G27470 34.956 4.51e-33 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g03285 K10666 - mtr:25493170 253.447