Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g03284 ATGGACTTTGAGCATGAAGACTCCTTTAACCAAAAATGGAAAGCCGATGGAAATTCTGTCACTGAGACTGAGGCAGAGACAGAGAAAGAGAATTCTGACAATTGTTTTGATTGCCACATCTGCTTAGATTTTGCACACGAACCAGTAGTAACTTTATGTGGCCACCTTTTCTGTTGGTCCTGCATCTATAAATGGCTCTTTGTGCAAAGGGCTTCACTTGCACCTGATGAGCATCCACAGTGTCCAGTTTGCAAACATGATATTTCTCACACCAAAATGGTCCCTCTCTATGGAAGAGGCCAGAGCCAGACTCGACGCGGCCGCAACCGGAAGGCTACCCTTGAAGATATTTCTATACCACCAAGACCACCTGCTTCAGAGATTCAATCTCTATTGGAAACGCCAACATCACCTCAAACTGATCAACAAGAGAATGATGACACATCACAAGTGCAGAATCTTGATACCTTAGTGACACCGCTTGAACTGTACTTTTCTATGAGGTATTCTTAG 513 0.4386 MDFEHEDSFNQKWKADGNSVTETEAETEKENSDNCFDCHICLDFAHEPVVTLCGHLFCWSCIYKWLFVQRASLAPDEHPQCPVCKHDISHTKMVPLYGRGQSQTRRGRNRKATLEDISIPPRPPASEIQSLLETPTSPQTDQQENDDTSQVQNLDTLVTPLELYFSMRYS 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g03284 170 ProSitePatterns Zinc finger RING-type signature. 53 62 IPR017907 -
Mepo2g03284 170 MobiDBLite consensus disorder prediction 97 150 - -
Mepo2g03284 170 MobiDBLite consensus disorder prediction 1 26 - -
Mepo2g03284 170 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 6 150 IPR045103 GO:0005783|GO:0006511|GO:0061630
Mepo2g03284 170 SUPERFAMILY RING/U-box 33 97 - -
Mepo2g03284 170 ProSiteProfiles Zinc finger RING-type profile. 38 85 IPR001841 -
Mepo2g03284 170 SMART ring_2 38 84 IPR001841 -
Mepo2g03284 170 Pfam Zinc finger, C3HC4 type (RING finger) 38 84 IPR018957 GO:0046872
Mepo2g03284 170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 114 IPR013083 -
Mepo2g03284 170 MobiDBLite consensus disorder prediction 129 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g03284 Mepo-Chr2 42540063 42541222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g03284 5 137 C3H Transcription Factor Family AT4G27470 45.185 5.82e-35 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g03284 K10666 - mtr:25493170 306.219
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo2g03284 2 42540063 42541222 Mepo6g00425 6 4339622 4341536 PCT