Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g03185 ATGGAATTCAAGAAACGCAAAACCGAAGAAAACGGCGACGCTAATTCTCCACCCTCCTCCATCGACGCCGCTGTCATACCCACCGCTCTTACCTCAGACGACATCCGCAAGATTCTCCAACCTTTCACTCAAGAACAACTACTCGACCTTCTCCAATCCGCCTCACTCCAACACCCTGACATCCTCGACGCCGTACGCTCCGTCGCCGACCGTGATACCACCCGTCGTAAACTCTTCGTCCGTGGTCTCTCCGGTGATACCACCACCGAAACACTCCGTACCGTTTTCTCTTCCTACGGTGACCTAGATGAAGCGATTGTGATATTCGATAAGGCCACCGGAAGATCCAAGGGTTACGGTTTTGTTGTGTTTCGACATGTCGACGGTGCTGTCTTAGCCTTAAAAGAGCCGAGCAAGAAAATCGATGGAAGAATGACGGTGACACAGCTTGCGGCGGCGGGTTCCACCGGCGGTGATGTTTCTTCTCGAAAGGTTTTCGTTGGAAACGTTCCGTTTGAAGTTTCAGCAGAGAGTTTATTAAGCGAATTTTCGAAGTATGGTGAAATTGAAGAGGGTCCATTAGGGTTTGATAAAGCGAGTGGTAAAACAAGAGGTTTTGCTTTCTTTGTGTACAAAACTGAAGAGGGTGCGAAGAATTCGGTTGCGGAGTCTATGAAAACCGTTGATGGGCATCAGGTGATTTGCAAGTTTGCTGTTGATAACAAAAAGCCCAAGCCTGCGGGCCAAAACCCATCAGGTTTTCCGGTGGATAATTCTAATGTTAATTATCATGCACCTAATGCCACCATGATGCCGCCGCAGTATGGTGCTCCTCCTAATAACTATGTGCAGCAACCTTATGGTAATCAGGTTCCTGCAGCTGGTGGATATGGACCTGGGCCTGTTCCTCATTATGGTGGGCCTGTAGCTGGACCTGGGCCTGTTCCCGGGCCAAGAGGGCCTCAGGCTGCTGTTGGTGGATACCCTGATGGTTCACAATATGGTTACCCGCAACAACCTATGCCGGTGCAGAGACCTCCCCCTGGAGGAATGTACCAGCCTTATTATTGA 1071 0.5005 MEFKKRKTEENGDANSPPSSIDAAVIPTALTSDDIRKILQPFTQEQLLDLLQSASLQHPDILDAVRSVADRDTTRRKLFVRGLSGDTTTETLRTVFSSYGDLDEAIVIFDKATGRSKGYGFVVFRHVDGAVLALKEPSKKIDGRMTVTQLAAAGSTGGDVSSRKVFVGNVPFEVSAESLLSEFSKYGEIEEGPLGFDKASGKTRGFAFFVYKTEEGAKNSVAESMKTVDGHQVICKFAVDNKKPKPAGQNPSGFPVDNSNVNYHAPNATMMPPQYGAPPNNYVQQPYGNQVPAAGGYGPGPVPHYGGPVAGPGPVPGPRGPQAAVGGYPDGSQYGYPQQPMPVQRPPPGGMYQPYY 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g03185 356 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 163 243 IPR000504 GO:0003723
Mepo2g03185 356 SUPERFAMILY RNA-binding domain, RBD 68 152 IPR035979 GO:0003676
Mepo2g03185 356 SMART rrm1_1 164 236 IPR000504 GO:0003723
Mepo2g03185 356 SMART rrm1_1 77 149 IPR000504 GO:0003723
Mepo2g03185 356 MobiDBLite consensus disorder prediction 284 356 - -
Mepo2g03185 356 SUPERFAMILY RNA-binding domain, RBD 160 254 IPR035979 GO:0003676
Mepo2g03185 356 PANTHER GEO13361P1-RELATED 161 342 - -
Mepo2g03185 356 Gene3D - 4 159 IPR012677 -
Mepo2g03185 356 MobiDBLite consensus disorder prediction 340 356 - -
Mepo2g03185 356 MobiDBLite consensus disorder prediction 1 21 - -
Mepo2g03185 356 MobiDBLite consensus disorder prediction 305 319 - -
Mepo2g03185 356 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 76 153 IPR000504 GO:0003723
Mepo2g03185 356 Gene3D - 160 261 IPR012677 -
Mepo2g03185 356 FunFam UBP1-associated protein 2C isoform A 59 159 - -
Mepo2g03185 356 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 165 231 IPR000504 GO:0003723
Mepo2g03185 356 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 78 144 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g03185 Mepo-Chr2 41488292 41490624 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g03185 151 335 C2H2 Transcription Factor Family AT2G19380 25.134 3.41e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g03185 K12741 - gmx:100804230 407.142