Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g03135 ATGGCTGCACAAACCAACGGTGGAGATCTGAATCAGAACCAAAACCAGAACCACCAGCAGCAGCAGCAGCAGCAGTGGGCTCAGCAGCAGCCACATCAGTATCAACAACAATGGATGTCTATGCAGTATCCAGCTACTGCTATGGCTATGATGCAACAGCAGATGATGATGTATCCTCAGCATTATATGCCTTATGTTCATCCTCATCATTATCAGCAGCAGCCGCCTCATCAACAGCAAGTGTCGCCGCCTCCATCTGCGCATAGTCATCATGGCGGCCATCAGCATCAGTATCAGCAGAAGCAGCTGGCGCCTGAAGAGATCAGGACGATCTGGCTTGGTGACCTTCATCATTGGATGGATGAGACTTTTCTTCACAATTGCTTTGCTCATACTGGAGAGGTTGTATCGGCCAAGGTCATACGTAATAAGCAAACTGGTCAATCGGAGGGGTATGGATTTGTCGAGTTCTATACGCGAGCAATGGCTGAGAAAGTCTTGCAGAACTTCAATGGTACTATGATGCCAAATACCGATCAGGCGTTTCGTCTGAATTGGGCTACATTCAGCGCTGCTGGTGGTGGTGGTGAGAGGCGTTCTTCTGAGGCTACATCTGATCTCTCTGTATTTGTGGGAGACTTAGCCATAGATGTTACTGATGCTATGCTTCAAGAGACGTTTGCTAGCAAATTCTCATCTATTAAGGGAGCAAAAGTTGTCATTGACTCTAATACTGGTCGTTCAAAAGGCTATGGTTTTGTAAGGTTTGGTGATGAAAGTGAAAGGACAAGAGCAATGACTGAAATGAATGGCGTTTATTGTTCTAGCAGGCCTATGCGAGTAGGTGTTGCAACACCGAAAAAAACTTACGGCAATCCACAACAATATTCTTCGCAAGCTGTAGTGTTGGCTGGTGGCGGTGGACACTCCAATGGTGCCGCGGCCCAAGGTTCCCAATCTGAAGGGGATTCTAACAACACAACTATATTTGTTGGAGGACTTGACTCTGACATCAGTGATGAGGATCTCAGACAACCATTTTTGCAATTTGGTGATGTTATTTCTGTGAAAATTCCAGTCGGTAAAGGATGTGGTTTTGTTCAACTTGCTGACAGAAAGAATGCCGAGGAAGCAATTCAGGGATTGAATGGAACAGTGATTGGAAAGCAGACAGTGCGTCTTTCTTGGGGTCGCAGTCCAGGAAATAAGCATTGGAGGAATGACTCTAATGGTTATGGAGGTCATGGATATGGTGGCCACGGATATGGAAGTAATGGATATGCTGCTAGGCAAAATCAGGATATAGCTATGCAACCCGCCGCTGCAGTTCAAGGGGCTTCATAA 1344 0.4628 MAAQTNGGDLNQNQNQNHQQQQQQQWAQQQPHQYQQQWMSMQYPATAMAMMQQQMMMYPQHYMPYVHPHHYQQQPPHQQQVSPPPSAHSHHGGHQHQYQQKQLAPEEIRTIWLGDLHHWMDETFLHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYTRAMAEKVLQNFNGTMMPNTDQAFRLNWATFSAAGGGGERRSSEATSDLSVFVGDLAIDVTDAMLQETFASKFSSIKGAKVVIDSNTGRSKGYGFVRFGDESERTRAMTEMNGVYCSSRPMRVGVATPKKTYGNPQQYSSQAVVLAGGGGHSNGAAAQGSQSEGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVISVKIPVGKGCGFVQLADRKNAEEAIQGLNGTVIGKQTVRLSWGRSPGNKHWRNDSNGYGGHGYGGHGYGSNGYAARQNQDIAMQPAAAVQGAS 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g03135 447 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 111 178 IPR000504 GO:0003723
Mepo2g03135 447 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 209 278 IPR000504 GO:0003723
Mepo2g03135 447 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 329 392 IPR000504 GO:0003723
Mepo2g03135 447 Gene3D - 190 295 IPR012677 -
Mepo2g03135 447 Gene3D - 308 434 IPR012677 -
Mepo2g03135 447 SUPERFAMILY RNA-binding domain, RBD 71 190 IPR035979 GO:0003676
Mepo2g03135 447 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 286 IPR000504 GO:0003723
Mepo2g03135 447 MobiDBLite consensus disorder prediction 68 101 - -
Mepo2g03135 447 FunFam Polyadenylate-binding protein RBP47B 108 188 - -
Mepo2g03135 447 FunFam Polyadenylate-binding protein RBP47 309 428 - -
Mepo2g03135 447 FunFam Polyadenylate-binding protein RBP47B 194 297 - -
Mepo2g03135 447 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 327 399 IPR000504 GO:0003723
Mepo2g03135 447 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 109 189 IPR000504 GO:0003723
Mepo2g03135 447 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 90 403 - -
Mepo2g03135 447 SMART rrm1_1 110 185 IPR000504 GO:0003723
Mepo2g03135 447 SMART rrm1_1 328 395 IPR000504 GO:0003723
Mepo2g03135 447 SMART rrm1_1 208 282 IPR000504 GO:0003723
Mepo2g03135 447 CDD RRM1_SECp43_like 110 190 - -
Mepo2g03135 447 Gene3D - 108 188 IPR012677 -
Mepo2g03135 447 SUPERFAMILY RNA-binding domain, RBD 205 312 IPR035979 GO:0003676
Mepo2g03135 447 MobiDBLite consensus disorder prediction 1 28 - -
Mepo2g03135 447 SUPERFAMILY RNA-binding domain, RBD 318 426 IPR035979 GO:0003676
Mepo2g03135 447 CDD RRM2_SECp43_like 206 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g03135 Mepo-Chr2 40944793 40949268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g03135 111 406 Eukaryotic Initiation Factors Gene Family AT4G34110 30.164 3.62e-26 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g03135 - - psat:127100806 626.706