Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g03088 ATGCAAGGTCAAAGGAGGACTATTGGGTCCTTCCCAACAATTGTTAACATGATGCAAGGGCCTAGTTCTAACGGCACTGATATGAATCATCAGTCTTCCTTGAATCATGCACAAAATGCAGTAGATTTCAGGCTGTCAGATTATAGGGGGTCTTCTGGTGAGACTGCATGTTTACGTGGTACTGGTCCTAATGTGAGCTTTAATGGCTGGAATACCGGCGAACCCAGTTCTGGACTGAATCTGGTCAACCAAGTCAACGATGATGGTCTAAAATCTGAACAAAGGTTGTCTTCTTCATGCAGTGCTATTGCTGAGGATGGTCTAAGACCCGAGGAAAGGCAATTACTTGGGAACCAATCCAGAATTCATCCTTCTTTTTTGCAAGGTTCCAGCTCCAATCATACAGCCCAGGGTATTAATTTTGGTATGGAGCACATTGCTAACTCATCTGATCGCGGGAAAGGTAAAGAAACTGGTAACGGTGTTAATAACAACGATCCTTTTGGATTAGATAGAGAGAAGACATCAATTGGCAGTTCTTCATTCAACCAAACAGGTGCTTCATCAGCAAGCTCTGGGTACATGGCTTGGGGAGATAGTGGCAGTTCAAGTTCTTCTTTAGCTAATTGGGGTCCTTCCTGCAAAAGAAAGGCCCTTGAAGATAGTTCTATGCAACTGTGTACCGGAGGAAGCTCGAGTTCCCTTGTACAATCTGAAAATGGTTACTGGCTTACTGATTCTGTTGATCTTAATGTTCCTGGAAGCTTAGGTGATTTGTCACCTTTAGAGGATTTCCGTGTTACTAGCCCTCCATTTCAGCAGAATACAAGAAATGAAGTGAGGCAAGAAGATGCATTTCCTTCAATGGTAAGTATTGCAGGAAATGTGGAAAGGCCTCTACGAAACTTTGATAGGAGAATGACCCATCTACATCATCCGGAATCTGTACCTCTCAATTTAACATCAACAGGGAGTGCTAGACATCATAATTACCCTTCTCCGCATCAAATACCCGGTTCTCTCTCATTTAACGAATCCTTGGATTTAAGGTTAGCAGCTGGAGTAACAGCTGCTAATTCTGCTGTGCCGCAAAACCAGTCACCATCCCTGCACATGCATCCTTTTCCGTGGAATAGAGCTGCTAATCCTAGAGTGGGCAGATCTTCAAGTTCTTATAGCTCAGGAGAAAGAGCAGTACGTGATGATTTTAATTTAAGAATCTTCCCAAGAGATAGTACCGAGCATCCCATGAACATGCCTGCATCTTCAGGACATGAACCTGCAGGTTGGTATGCATCTTCTAGCAATTTGAACAATGCTGGAGGCATACCTCCTCCATCCTGGATTGGATCTAGTTCAAACGTCCACTCGTTACCTAATCCCAGCTGGACATTTAACCATGAAGTCCCAACAGAAAATCTACAGAGAGTTTCAGAGTTCAGTCCCTGGTCCCTTTTTCCTTCAATCAGCTCAGCATCTGGTACTCATAATGGCCATTCCTCCTCTACTTCCGGCCCTCCATTTTCTCAGGGTTCTAGCAGTAATCAACCACATCCAAGACCATCATTTATGACGGAAAGAAGGGGTGGTGATGTTCTCTCTGCTCCTCATTCATTGCGAACATTACCCTTTGACAATGAGGGGAGACGCCGGCTCATATCCGAGATTCGCCAAGTCCTGCTAGCAATGCGGAGGGGTGAGAACTTACGAGCTGAGGATTATATGCTCTTTGACCCTTTCCTATATCATGGCATGGCTGAAATGCACGACAGACACAGAGAAATGCGCCTTGACGTTGATAACATGTCTTACGAGGAATTGTTGGCATTGGAGGAGCGTATAGGAGACGTAAGCACTGGACTGAGTGAAGATATAATTAATAAGTTGATGAAACAGCGATTTTACATGTCTCTCATGACAGAGTCTTCTTCTGATCTCGAACCTTGCTGTATCTGTCAGGAGGAATATGTTGATGGACAGAATCTCGGTTTGCTGGATTGTGGGCACGAGTTCCACAGTAACTGCATCACACAGTGGCTAATGCAGAAGAATCTGTGCCCAATTTGCAAAACAACGGCCTTGGCTACGTGA 2091 0.4452 MQGQRRTIGSFPTIVNMMQGPSSNGTDMNHQSSLNHAQNAVDFRLSDYRGSSGETACLRGTGPNVSFNGWNTGEPSSGLNLVNQVNDDGLKSEQRLSSSCSAIAEDGLRPEERQLLGNQSRIHPSFLQGSSSNHTAQGINFGMEHIANSSDRGKGKETGNGVNNNDPFGLDREKTSIGSSSFNQTGASSASSGYMAWGDSGSSSSSLANWGPSCKRKALEDSSMQLCTGGSSSSLVQSENGYWLTDSVDLNVPGSLGDLSPLEDFRVTSPPFQQNTRNEVRQEDAFPSMVSIAGNVERPLRNFDRRMTHLHHPESVPLNLTSTGSARHHNYPSPHQIPGSLSFNESLDLRLAAGVTAANSAVPQNQSPSLHMHPFPWNRAANPRVGRSSSSYSSGERAVRDDFNLRIFPRDSTEHPMNMPASSGHEPAGWYASSSNLNNAGGIPPPSWIGSSSNVHSLPNPSWTFNHEVPTENLQRVSEFSPWSLFPSISSASGTHNGHSSSTSGPPFSQGSSSNQPHPRPSFMTERRGGDVLSAPHSLRTLPFDNEGRRRLISEIRQVLLAMRRGENLRAEDYMLFDPFLYHGMAEMHDRHREMRLDVDNMSYEELLALEERIGDVSTGLSEDIINKLMKQRFYMSLMTESSSDLEPCCICQEEYVDGQNLGLLDCGHEFHSNCITQWLMQKNLCPICKTTALAT 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g03088 696 FunFam E3 ubiquitin-protein ligase MBR2 616 694 - -
Mepo2g03088 696 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 164 694 IPR045191 GO:0061630
Mepo2g03088 696 Pfam Ring finger domain 649 690 IPR001841 -
Mepo2g03088 696 MobiDBLite consensus disorder prediction 147 192 - -
Mepo2g03088 696 MobiDBLite consensus disorder prediction 491 521 - -
Mepo2g03088 696 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 611 694 IPR013083 -
Mepo2g03088 696 ProSiteProfiles Zinc finger RING-type profile. 649 690 IPR001841 -
Mepo2g03088 696 SMART ring_2 649 689 IPR001841 -
Mepo2g03088 696 MobiDBLite consensus disorder prediction 491 539 - -
Mepo2g03088 696 MobiDBLite consensus disorder prediction 174 192 - -
Mepo2g03088 696 SUPERFAMILY RING/U-box 630 693 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g03088 Mepo-Chr2 40517803 40523080 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g03088 1 696 C3H Transcription Factor Family AT2G15530 36.474 2.99e-103 329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g03088 - K19041 gmx:100809024 1057.74