Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g03057 ATGGAACATCATAGCCGAGAGGTACGAGTCGATATGCCTTTAGATACAAGAGCGGATATTGCTAGGTGGGCGATAAGAGCGTTGCCGCCGGTTAAAACCTTGAATGGCGAGCAAGCTAGCGATTGTCCTATTTGCAAGGAAGAATATAAGAAAGGGGAGTTGATTCAACCTTTTACTCGGTGTGCTCATGAATTTCATTCATCATGCCTCAATACTTGGTTATTTGGGGGAAAATCAACTTGTCCCGTTTGCCGTCAATATTTGATCCAAACTTCACACAACAATTTTCAATCTTCAAAACACCAAAATCCGAATACCCCACTTCGCCGAAACGCCGCAGATGCTTGCATAAGCTATGGTAAGCACTTGAACAAACCTGATAATACTTTCAAAAACTATGGTAAAGTTGTGTTGCTGGGAGAAGGACAAGGGGGAGTTGCAGCAGATTCAAATGAGGCAAATGCAGATTCAGATGAGAGGATTAACTCACACGAGGAATATGAGAGAAGTGAATCTCAATCTACAATAATTACAATTCAAAGTGCACGGTCTAGCATGGAACATTATAGACGAGATGCACGAGTCGATATGCCTTCCGTTACAAAATCGGAGATTGCTAGGTGCGCGTTAACAGCGTTGCCGCCGGTTAAAACCTTTAATGGAGAGCTGGTTAGGGATTGTCCTATTTTCATGGAAGAATTTAAGAAAGGGGAGTTGATTCAACCATTTGGTTTGTGTGCTCATGAATTTCATTCATCATGCCTCAATTCTTGGTTACTTGGAGGAAAAACAACTTGTCTAATTTGTCGTCAAGATTTGTCAAATACGGTATGTACATCTAGAGCCACTTAG 852 0.4167 MEHHSREVRVDMPLDTRADIARWAIRALPPVKTLNGEQASDCPICKEEYKKGELIQPFTRCAHEFHSSCLNTWLFGGKSTCPVCRQYLIQTSHNNFQSSKHQNPNTPLRRNAADACISYGKHLNKPDNTFKNYGKVVLLGEGQGGVAADSNEANADSDERINSHEEYERSESQSTIITIQSARSSMEHYRRDARVDMPSVTKSEIARCALTALPPVKTFNGELVRDCPIFMEEFKKGELIQPFGLCAHEFHSSCLNSWLLGGKTTCLICRQDLSNTVCTSRAT 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g03057 283 SUPERFAMILY RING/U-box 26 91 - -
Mepo2g03057 283 MobiDBLite consensus disorder prediction 147 175 - -
Mepo2g03057 283 SUPERFAMILY RING/U-box 226 275 - -
Mepo2g03057 283 ProSiteProfiles Zinc finger RING-type profile. 227 270 IPR001841 -
Mepo2g03057 283 ProSiteProfiles Zinc finger RING-type profile. 42 85 IPR001841 -
Mepo2g03057 283 MobiDBLite consensus disorder prediction 153 171 - -
Mepo2g03057 283 SMART ring_2 42 84 IPR001841 -
Mepo2g03057 283 SMART ring_2 227 269 IPR001841 -
Mepo2g03057 283 Pfam Ring finger domain 41 85 IPR001841 -
Mepo2g03057 283 Pfam Ring finger domain 226 270 IPR001841 -
Mepo2g03057 283 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 18 85 - -
Mepo2g03057 283 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 94 IPR013083 -
Mepo2g03057 283 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 215 277 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g03057 Mepo-Chr2 40238811 40240886 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g03057 36 91 C3H Transcription Factor Family AT1G76410 42.857 2.08e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g03057 - - tpra:123914815 127.872