Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g03050 ATGGGTCGTGTTAAACTTGAGATAAAAAAAATAGAGAACACAGTGAATCGTCAAGTTACATATTCAAAGCGTAGAAATGGTCTCATCAAAAAAGCTTATGAGTTATCAATCCTTTGTGATATTGATATTGCCCTTATAATGTTTTCTCCGTCAAATCGTCTTAATCATTTTTCAGGTAAAAGAAGGATAGAGGATGTTTTAACTCGTTACATTAATATTCCTGACCAAGAAAGAGATAATGCTGTAAGTTTTCCTGAGCTACCCTACCGAAGTTTATATTGCATTTTGCAGTATTTGCTGAGGATACTTCAGCAGTTGAGGAATGAAAATGACATATCCCTTCATATGTCCAATCCGGGGGACATTAACTCTGAGGTTGAGGATCTCCAACAAGAAGTTAGTAGATTACAACAACAACTTCAAATGGTAGAGGAGCAGATAAGGAAATATGAACCCGACCCATTAAAGATGACATCTATAGCAGAGCTTGAAACCGGTGAAAAAAACGTAGTAGAAACCTTGGCCCGTGTCATGGAGAGAAAGGAACAGTTGTTGAACAACAATCTATCTTCGTATGATCCATCAGCTATTCAGGGGATTCCGACCTCTTTCGAGAATGTTAGTTGGCTGCAAGATGGTGGACAGAACCAACCCCAAATTTTTGATGCATCAGCTCCTATGGATCCTCTCAGGGATTTGTCCTCTACTGTATATGGTTCATTTTCACAAGGGACGAGTTCAAATGTTGTTGATCCAAGAGGTATAGGAGAGTGCCACGTGCCAAATCCAAACGATGGAAACATTCAAACATGGCCTCAAGGATACACATTATATCCTCAACATGACATTGTAGGAACTGATCGTCATCAGAACATCCAAGATATAATGCTACATGGACAAATGAACATGCCAATCACTGCCTCACAAGTTGAACCTCCCAAAAATGATTCAACAGAATATGATCAATGTAACCAACCTAATCATCAGCTTCATGGTCAATGA 1002 0.3892 MGRVKLEIKKIENTVNRQVTYSKRRNGLIKKAYELSILCDIDIALIMFSPSNRLNHFSGKRRIEDVLTRYINIPDQERDNAVSFPELPYRSLYCILQYLLRILQQLRNENDISLHMSNPGDINSEVEDLQQEVSRLQQQLQMVEEQIRKYEPDPLKMTSIAELETGEKNVVETLARVMERKEQLLNNNLSSYDPSAIQGIPTSFENVSWLQDGGQNQPQIFDASAPMDPLRDLSSTVYGSFSQGTSSNVVDPRGIGECHVPNPNDGNIQTWPQGYTLYPQHDIVGTDRHQNIQDIMLHGQMNMPITASQVEPPKNDSTEYDQCNQPNHQLHGQ 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g03050 333 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mepo2g03050 333 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mepo2g03050 333 Pfam K-box region 125 191 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mepo2g03050 333 MobiDBLite consensus disorder prediction 307 333 - -
Mepo2g03050 333 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mepo2g03050 333 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mepo2g03050 333 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mepo2g03050 333 Gene3D - 14 86 IPR036879 GO:0003677|GO:0046983
Mepo2g03050 333 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mepo2g03050 333 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Mepo2g03050 333 Coils Coil 126 153 - -
Mepo2g03050 333 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 224 - -
Mepo2g03050 333 FunFam MADS-box transcription factor 41 13 92 - -
Mepo2g03050 333 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mepo2g03050 333 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g03050 Mepo-Chr2 40136192 40138972 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g03050 1 307 Type I MADS-box Gene Family AT1G22130 52.665 3.54e-103 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mepo2g03050 K-box 6.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g03050 - - gmx:100305913 496.508