Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g02988 ATGTCAAAACAAAACAATCCTCTTCCTTTTGTCTTAATCATAATTACATTATCTTGTTACTTAAATTCCTCAACGGCGAAAGCGGCGTCATCGACATACAATGTAATCAACTATGGAGCCAAACCAGATGGTAAAACTGATTCTACAAAGGCATTTCTAAATGTATGGTCTAAGGCATGTTCCTCGCCGTATCCGGCGGCAATTTACGTGCCACAAGGGAAATTCTTACTTGGAACTGCAACATTTAGTGGAAAATGTATCAATAAAGCTATTTCCATTACCATTGATGGCACTTTGGTGGCTTCATCTAATTACCGTGTAACGGGTAAAAATGGTAATTGGTTGAAATTTCAGCATGTTGACGGGGTTTCGATCCGCGGCGGTGTGCTTGATGGACAAGGTACTGCCTTGTGGGATTGTAAAAATTCGGACAAAAGTAATTGCCCAACTGGAGCCACGACGCTGGAATTCAGTAGCTCAAAAAACATTATGATTAGTGGTTTGACATCAATGAATAGTCAAATGTTTCACATAGCGTTCAATGGATGCCAAAATGTAAAAACGCAAGGTGTAAATATCATGGCAGCCGGAAACAGCCCAAACACCGACGGCATCCACGTCCAAATGTCCTCCCACGTCACCATCGTCAACTCCAAAATTCGAACCGGTGATGATTGTATATCAATTGGTCCTGGTACCAGTAATTTGTGGATTGAAAACATTGCATGTGGACCGGGACATGGAATAAGTATTGGAAGCTTGGGATGGAAGTTAAACGAACCAGGAGTACAAAATGTGACAGTTAAAACGGTTACGTTCACGGGGACTCAAAATGGTGTTAGAATTAAGTCTTGGGGTAGACCTAGCAATGGATTTGTAAGGAACATATTTTTCCAAGATGCAATCATGGTTAATGTCCAAAACCCAATTGTAATTGACCAGAATTATTGCCCAAACAACCAAGGCTGCCCCGGTCAGGCCTCTGGAATTAAAGTGAGTGGTGTAACATACCAAAACATTCATGGAACATCTGCAACACAAGTAGCTGTGAAATTCGATTGTAGTTCAAAATATCCATGCAGTGGAATAAAGATGAAGGATGTAAAGCTCACTTACAAAAATCAAGTAGCTGAAGCATCATGTAACCATGCTGGTGGAGCTGCCTTGGGTTCAGTTCAACCAGAGAGTTGCTTATAG 1197 0.4119 MSKQNNPLPFVLIIITLSCYLNSSTAKAASSTYNVINYGAKPDGKTDSTKAFLNVWSKACSSPYPAAIYVPQGKFLLGTATFSGKCINKAISITIDGTLVASSNYRVTGKNGNWLKFQHVDGVSIRGGVLDGQGTALWDCKNSDKSNCPTGATTLEFSSSKNIMISGLTSMNSQMFHIAFNGCQNVKTQGVNIMAAGNSPNTDGIHVQMSSHVTIVNSKIRTGDDCISIGPGTSNLWIENIACGPGHGISIGSLGWKLNEPGVQNVTVKTVTFTGTQNGVRIKSWGRPSNGFVRNIFFQDAIMVNVQNPIVIDQNYCPNNQGCPGQASGIKVSGVTYQNIHGTSATQVAVKFDCSSKYPCSGIKMKDVKLTYKNQVAEASCNHAGGAALGSVQPESCL 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g02988 398 FunFam Polygalacturonase 7 23 397 - -
Mepo2g02988 398 ProSitePatterns Polygalacturonase active site. 240 253 IPR000743 GO:0004650|GO:0005975
Mepo2g02988 398 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Mepo2g02988 398 SMART pbh1 210 231 IPR006626 -
Mepo2g02988 398 SMART pbh1 263 284 IPR006626 -
Mepo2g02988 398 SMART pbh1 90 127 IPR006626 -
Mepo2g02988 398 SMART pbh1 327 367 IPR006626 -
Mepo2g02988 398 SMART pbh1 233 253 IPR006626 -
Mepo2g02988 398 Pfam Glycosyl hydrolases family 28 60 382 IPR000743 GO:0004650|GO:0005975
Mepo2g02988 398 Gene3D - 18 396 IPR012334 -
Mepo2g02988 398 PANTHER - 31 384 - -
Mepo2g02988 398 SUPERFAMILY Pectin lyase-like 20 398 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g02988 Mepo-Chr2 39535789 39538261 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g02988 30 398 Glycoside Hydrolase AT3G59850 65.946 0.0 515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g02988 K01184 - gmx:100806846 650.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo2g02988 2 39535789 39538261 Mepo2g02988 2 39535789 39538261 ECH