Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g02979 ATGTTGGGTGGGTTATACGGAGACCTACCTCCACCTTCTTCCGCCGAAGAAGATAAACCAACCACCAATGTCTGGTCATCCAGCACCAAAATGGCCCCCGCTACTCTCCGTAAACCCTCCTCTTCTCATCTCACACCTCCCCATACCCTTCTTCGATCCCAAAACAAACCTAAAATCGTCAATTCCACCAAAACTATTCTCTCTCCTGCACCACAGCCGATTCTTGCTTCACCACTTAACGATATCGTCGTTCAACCGTCTCAACCGGCTCTTGTTGGAGTACAGTCGACGGTGATGGAGGAGTATGATCCGGCGAGGCCGAATGATTATGAAGAGTATCGGAGGGAGAAGAAGAGGAAAGCTAGAGAAGCGGATATGATGAGGGAGCTGGAGAGACGGAGGGAGGAGGAAGAGGAGAGGGAGAAAGAGAGGGAGAGGGAGAGAGAAAGAGAAAGGGAGAGAGACAGAGATAGGGAGAGAGATCAGGGAGATTCCAGATTGAATATTTCTGGCGAGGAAGCGTGGAGAAGGCGTGTGGGGATGAGCGGAGGAGGTGGTGGACGGGGTGTGCCGAGGTCGCCATCGCCTCCCGGGAGTGTGGATGGATTTAGTATTGGGAAGTCGGAGACGGTTGGGTTGGGAGTTGGTGCTGGTGGGCAGATGACTGCTGCTCAGAGGATGATGGCAAAGATGGGGTGGAAACAAGGGCAAGGGCTTGGGAAACAGGAGCAAGGGATTACAACTCCGTTGATGGCGAAGAAAACTGATAGACGGGCTGGGGTTATCGTTAATGCCAGTGACAGTAAGTCTGATAAGAAAGTTAAGAGTGTTAACATCAATGGTGTACCTACCAGAGTACTGCTACTTAGAAACATGGTGGGGCCTGGTGAGGTAGATGATGAGCTGGAAGATGAGGTAGGATCAGAATGTGCCAAGTATGGAACAGTAACCCGAGTTCTGATATTTGAGATAACAGAGCCAAATTTTCCCACCGACGAAGCAGTAAGAATCTTTGTGCAGTTTGAGAGATCTGAAGAAACAACTAAAGCGCTTGTTGACCTTGATGGTCGATACTTTGGGGGTAGAACAGTGCGTGCCACATTTTACGACGAGGACAAGTTTAGCAAGAATGAGTTAGCTCCAATGCCAGGAGAAATTCCTGGCTTCACCTAG 1173 0.4996 MLGGLYGDLPPPSSAEEDKPTTNVWSSSTKMAPATLRKPSSSHLTPPHTLLRSQNKPKIVNSTKTILSPAPQPILASPLNDIVVQPSQPALVGVQSTVMEEYDPARPNDYEEYRREKKRKAREADMMRELERRREEEEEREKERERERERERERDRDRERDQGDSRLNISGEEAWRRRVGMSGGGGGRGVPRSPSPPGSVDGFSIGKSETVGLGVGAGGQMTAAQRMMAKMGWKQGQGLGKQEQGITTPLMAKKTDRRAGVIVNASDSKSDKKVKSVNINGVPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPTDEAVRIFVQFERSEETTKALVDLDGRYFGGRTVRATFYDEDKFSKNELAPMPGEIPGFT 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g02979 390 Coils Coil 110 155 - -
Mepo2g02979 390 FunFam Putative splicing factor 45 284 370 - -
Mepo2g02979 390 MobiDBLite consensus disorder prediction 95 206 - -
Mepo2g02979 390 SUPERFAMILY RNA-binding domain, RBD 287 374 IPR035979 GO:0003676
Mepo2g02979 390 CDD RRM_UHM_SPF45 283 379 IPR034653 -
Mepo2g02979 390 MobiDBLite consensus disorder prediction 104 173 - -
Mepo2g02979 390 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 275 371 IPR000504 GO:0003723
Mepo2g02979 390 PANTHER SPLICING FACTOR 45 SPF45 1 381 IPR040052 GO:0045292
Mepo2g02979 390 SMART G-patch_5 218 264 IPR000467 GO:0003676
Mepo2g02979 390 ProSiteProfiles G-patch domain profile. 220 266 IPR000467 GO:0003676
Mepo2g02979 390 SMART rrm2_1 286 367 IPR003954 GO:0003676
Mepo2g02979 390 Gene3D - 281 379 IPR012677 -
Mepo2g02979 390 MobiDBLite consensus disorder prediction 16 57 - -
Mepo2g02979 390 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 311 365 IPR000504 GO:0003723
Mepo2g02979 390 MobiDBLite consensus disorder prediction 1 57 - -
Mepo2g02979 390 Pfam G-patch domain 223 262 IPR000467 GO:0003676
Mepo2g02979 390 PIRSF SPF45 3 386 IPR040052 GO:0045292
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g02979 226 261 C2H2 Transcription Factor Family AT5G26610 61.111 1.15e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g02979 K12840 - gmx:100800998 490.73