Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g02953 ATGGAAGAGAAACATAGGAAGTTTGTATGCAAATATTGCTTCAAGAGGTTTCCTTGTGGGAAGTCTCTTGGTGGTCACATCAGAACACACATGACAGAAGAAAGAAATAATGCTGCTGCTATTGGTGATGCTGAGCATGTTGCTGCTGCTGCTTCTGGTGATGCTGGAAACCTCATTTATGGTCTAAGAGAAAATCCCAAGAAAACAATGAGGTTTGTGCATTCTCATCATCATCATGCTGCTGCTGTTGCTGCAACCACATTGGAACAAAATGAAATGATCAAATTCTGCAAAGAATGTGGGAAAGGTTTTCCTTCATTGAAAGCACTGTGTGGACACATGGCTTCTCATTCTGAGAAAGAGAAAACGATCAACAAGGCTATGATGGAGGAGGATACTCAATCTGATGATACTGATGATGTTTGTGTTGCTGCTACAACAATGAATCTAAGGAAATCTAAGAGAAGAGTTAGGTTCAAGTCTCTTACTCTTTCAAATCACCAACCTTCTTCTTCTTCTGTTAATGGTGGTTCTTCTTCTGTTTCTGAGATGGAACAGGAACAACAAGAAGAAGTTGCTAGGTGTTTGATGTTGTTGTCTAGAGATTTTTTTGGTCATAAGGGTCGTTTTGTTTCTGAATCTTCTGATAATAACAATGAGATTGTTCTTGAGACGAAATCGAAGATTGTCATCAGAAATGGTAACAAATTTGTAGCTAATAATGCTCGTGAATTTGTGGAGAAGAAGAAGAAGCTGAAGATGGTTGGGATTGGTGTTTCAAATAATTCTGATTCGAGGGATTTCAGATATGGTTCAAAGAAGATCAAATTTGTAGATTCAAGTGTTTCAAGCTATGAATTCAAGAGGCCTAAGGTGGAAGCAGATAAATCTGGATTTGAGGATTGTAGAGGCAAATACAATAACAATGTAACAACTATGTTTAAGAAATCAGGTATGATGAATAAGGATTTGGATCATGATACAAATTTCGATTCGAGAAAGAAAGCAAACTCTGAAGGATTTTCTTTTAGCAACAAAAATGAAGAAATCTATGAGAATGGTAGCAAAAGTTTGAAATATGAGTTTTATGGTTATGAAAAGGACAATGATATTTCTTATGATTCAGTAACAGATGTTGAGAGTGATGAAGAAAACAGTTCAGAAAGTGATTCTTTTCCTGCTGCAAAATCTCATACCAGTAAAGCTGTGAATAGAAAGAAATTATCAAGCATTAAGGGTAAGAAGAAGAAGTTGAAGTCAAAGAAAAGCAAAGAATATGAATGTCCAATTTGCTACAAAATTTTCAGGTCAGGACAAGCATTAGGAGGACATAAAAGATCACATTTTGTTGGAGGATCTGAAGAGAACACTTTTGTGATCAAACAAGCTGCTGCTGCTGCTGCTGTTGCTGTTCCTTGTTTGATTGATCTCAATCTACCTGCTCCTGTTGATGAATAA 1458 0.3656 MEEKHRKFVCKYCFKRFPCGKSLGGHIRTHMTEERNNAAAIGDAEHVAAAASGDAGNLIYGLRENPKKTMRFVHSHHHHAAAVAATTLEQNEMIKFCKECGKGFPSLKALCGHMASHSEKEKTINKAMMEEDTQSDDTDDVCVAATTMNLRKSKRRVRFKSLTLSNHQPSSSSVNGGSSSVSEMEQEQQEEVARCLMLLSRDFFGHKGRFVSESSDNNNEIVLETKSKIVIRNGNKFVANNAREFVEKKKKLKMVGIGVSNNSDSRDFRYGSKKIKFVDSSVSSYEFKRPKVEADKSGFEDCRGKYNNNVTTMFKKSGMMNKDLDHDTNFDSRKKANSEGFSFSNKNEEIYENGSKSLKYEFYGYEKDNDISYDSVTDVESDEENSSESDSFPAAKSHTSKAVNRKKLSSIKGKKKKLKSKKSKEYECPICYKIFRSGQALGGHKRSHFVGGSEENTFVIKQAAAAAAVAVPCLIDLNLPAPVDE 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g02953 485 SMART c2h2final6 8 30 IPR013087 -
Mepo2g02953 485 SMART c2h2final6 95 117 IPR013087 -
Mepo2g02953 485 SMART c2h2final6 426 448 IPR013087 -
Mepo2g02953 485 SUPERFAMILY beta-beta-alpha zinc fingers 96 448 IPR036236 -
Mepo2g02953 485 SUPERFAMILY beta-beta-alpha zinc fingers 5 34 IPR036236 -
Mepo2g02953 485 ProSitePatterns Zinc finger C2H2 type domain signature. 10 30 IPR013087 -
Mepo2g02953 485 ProSiteProfiles Zinc finger C2H2 type domain profile. 95 122 IPR013087 -
Mepo2g02953 485 MobiDBLite consensus disorder prediction 400 417 - -
Mepo2g02953 485 ProSiteProfiles Zinc finger C2H2 type domain profile. 8 35 IPR013087 -
Mepo2g02953 485 MobiDBLite consensus disorder prediction 376 417 - -
Mepo2g02953 485 ProSitePatterns Zinc finger C2H2 type domain signature. 97 117 IPR013087 -
Mepo2g02953 485 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 485 - -
Mepo2g02953 485 ProSiteProfiles Zinc finger C2H2 type domain profile. 426 448 IPR013087 -
Mepo2g02953 485 Pfam C2H2-type zinc finger 426 448 - -
Mepo2g02953 485 Pfam C2H2-type zinc finger 8 32 - -
Mepo2g02953 485 Pfam C2H2-type zinc finger 97 119 - -
Mepo2g02953 485 MobiDBLite consensus disorder prediction 164 185 - -
Mepo2g02953 485 Gene3D Classic Zinc Finger 84 153 - -
Mepo2g02953 485 ProSitePatterns Zinc finger C2H2 type domain signature. 428 448 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g02953 Mepo-Chr2 39255406 39256863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g02953 1 485 C2H2 Transcription Factor Family AT1G26610 40.116 7.17e-76 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo2g02953 zf-C2H2_6 2.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g02953 - - psat:127106931 570.852