Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g02879 ATGGTTTCCCGGGAAAACACGAATTGGATTAACGATTACGGTTTTTATGATGATATTCCCGTTCCCGATTCAACCTTCGCTCTTCCCTCTTCCGCCTTCACCTGGCCCACTCAGCCCCCCTTCAACCTTTCTTCCAATGTCAGTGCTGAAATTGATGGCTCATTAGGGGATTCTGACGGTCTCAAAGAGTCTGGTTCAAAGAAGAGGGTTAGATCTGAGTCATGTGCTGCTACTAGCTCCAAAGCATGTCGGGAGAAGTTGCGTAGAGATAGGCTTAACGACAAGTTTATTGAATTGGGCTCCATTTTGGAGCCTGGAAGGCCTGCCAAAACAGACAAGGCTGCCATCCTGATTGATGCTGTCCGAATGGTGACACAGTTAAGGGGTGAAGCCCAAAAGTTGAAAGATGCCAACTCAGGTCTTCAAGAAAAGATTAAAGAGTTAAAGGTTGAGAAGAACGAACTCCGTGACGAGAAACAGAGGCTCAAGGCAGAGAAAGAGAAGTTGGAGCAGCAGCTGAAATCTATGAATGCACCACCTAGTTTCTTGCCTACCCCCACCGCACTCCCTGCGGCATTTGCTGCACAAGGCCAAGCCCATGGCAACAAATTGGTACCCTTTATTAGTTATCCAGGAGTTGCAATGTGGCAATTTATGCCACCTGCTGCAGTGGATACCTCACAGGATCATGTACTTCGTCCTCCAGTTGCCTAA 714 0.4776 MVSRENTNWINDYGFYDDIPVPDSTFALPSSAFTWPTQPPFNLSSNVSAEIDGSLGDSDGLKESGSKKRVRSESCAATSSKACREKLRRDRLNDKFIELGSILEPGRPAKTDKAAILIDAVRMVTQLRGEAQKLKDANSGLQEKIKELKVEKNELRDEKQRLKAEKEKLEQQLKSMNAPPSFLPTPTALPAAFAAQGQAHGNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g02879 237 CDD bHLH_AtILR3_like 81 156 - -
Mepo2g02879 237 Gene3D - 77 154 IPR036638 GO:0046983
Mepo2g02879 237 Pfam Helix-loop-helix DNA-binding domain 80 127 IPR011598 GO:0046983
Mepo2g02879 237 Coils Coil 124 179 - -
Mepo2g02879 237 SMART finulus 82 133 IPR011598 GO:0046983
Mepo2g02879 237 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 76 127 IPR011598 GO:0046983
Mepo2g02879 237 FunFam Transcription factor bHLH34 67 125 - -
Mepo2g02879 237 PANTHER BHLH TRANSCRIPTION FACTOR 4 237 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Mepo2g02879 237 MobiDBLite consensus disorder prediction 54 73 - -
Mepo2g02879 237 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 76 147 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g02879 Mepo-Chr2 38561239 38564748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g02879 1 237 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 73.222 5.93e-121 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mepo2g02879 HLH 9.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g02879 - - gmx:100788858 371.318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo2g02879 2 38561239 38564748 Mepo2g02879 2 38561239 38564748 ECH
Mepo6g03247 6 44431567 44433884 Mepo2g02879 2 38561239 38564748 PCT