Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g02853 ATGGATTCTCAAGTCAAGTATGCTGTTGTTGTCAAGGTTATGGGTCGTACTGGTTCTAGAGGACAGGTGACTCAAGTTAGGGTCAAGTTTAATGATGACCCGAACCGTCACATCATGAGGAACGTGAAGGGACCAGTTAGAGAAGGAGACACCCTCACCCTGCTTGAGTCTGAAAGAGAAGCAAGAAGGTTGCGCTAG 198 0.4747 MDSQVKYAVVVKVMGRTGSRGQVTQVRVKFNDDPNRHIMRNVKGPVREGDTLTLLESEREARRLR 65
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g02853 65 FunFam 40S ribosomal protein S28 1 65 - -
Mepo2g02853 65 Pfam Ribosomal protein S28e 4 64 IPR000289 GO:0003735|GO:0005840|GO:0006412
Mepo2g02853 65 SUPERFAMILY Nucleic acid-binding proteins 2 65 IPR012340 -
Mepo2g02853 65 Hamap 30S ribosomal protein S28e [rps28e]. 1 65 IPR000289 GO:0003735|GO:0005840|GO:0006412
Mepo2g02853 65 ProSitePatterns Ribosomal protein S28e signature. 56 64 IPR028626 -
Mepo2g02853 65 Gene3D - 1 65 IPR012340 -
Mepo2g02853 65 PANTHER 40S RIBOSOMAL PROTEIN S28 1 65 IPR000289 GO:0003735|GO:0005840|GO:0006412
Mepo2g02853 65 CDD S1_S28E 6 65 IPR000289 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g02853 Mepo-Chr2 38288470 38289596 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g02853 1 65 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 87.692 4.62e-35 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g02853 K02979 - egr:104443388 94.7449