Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mepo2g02833 | ATGAGCCGAAACATGAACAATTTTATGCCTTTGCCTGGGCTTCGGAGAACAGATTCTAGAGCCTATGATACTCCTCATCACACGTCCGATAATCCTCATGAATTCAATGAAGTACCCGTGTTTTACAGATCTCATCACTCTTCTAGAGCCAATAATGATGAGAGGAGTTCAGGTGCACAAGATCCACTCCAATTGTGGGAAGTCAGAAGAACTCCTACAGAACATCACAGGATTCCATATTTTCCCTTACAACCACATAGAAGACAACAAACTTATAATCACAATGAGGACATGAGAAGGGGTTTCAACCCGACCAGGCTCAGACAGATTTTCCAGCATCCACCTTCAAGATCATCATCAACACAGCAAAGAAACACTCAAGTTCCACAATCGGTAGATAATTCCAAATCCACTTTATTAAGCAAGTTAAGGAAAGTAGTCTATGATCCTACACCAAAGCGTTTAGCTAGAAGAGTTAGCTTATATTATAGAGGCAATGCAGCAAATGATTTGAAAGAGAGTGTTAAAGAAAAGAAGGAAGATGGTATGAGATGTGCTATTTGCTTGGAGGATTTTGAGGCCAAAGAAGAGGTGATGCTTACTCCATGCAACCACATGTTTCATGAGGATTGCATAGTAACTTGGTTAACAAGTAAAGGTCAGTGTCCAGTTTGTAGGTTTGTGATTTTTGAAGGAGTGAAGGAAAAATCATCTCCCTTTAACAGGAATGACATTACCAATTTGGAACCCGAGGGCGTGATCTCTGCAGAGCTTTTGTCAGTTTTGAGGGCCATGGAAGAAGCTTTTCATTTAGAAAGTGTGAATTACGGATAA | 834 | 0.4041 | MSRNMNNFMPLPGLRRTDSRAYDTPHHTSDNPHEFNEVPVFYRSHHSSRANNDERSSGAQDPLQLWEVRRTPTEHHRIPYFPLQPHRRQQTYNHNEDMRRGFNPTRLRQIFQHPPSRSSSTQQRNTQVPQSVDNSKSTLLSKLRKVVYDPTPKRLARRVSLYYRGNAANDLKESVKEKKEDGMRCAICLEDFEAKEEVMLTPCNHMFHEDCIVTWLTSKGQCPVCRFVIFEGVKEKSSPFNRNDITNLEPEGVISAELLSVLRAMEEAFHLESVNYG | 277 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mepo2g02833 | 277 | MobiDBLite | consensus disorder prediction | 112 | 136 | - | - | |
| Mepo2g02833 | 277 | MobiDBLite | consensus disorder prediction | 19 | 33 | - | - | |
| Mepo2g02833 | 277 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 169 | 241 | IPR013083 | - | |
| Mepo2g02833 | 277 | SMART | ring_2 | 185 | 225 | IPR001841 | - | |
| Mepo2g02833 | 277 | MobiDBLite | consensus disorder prediction | 1 | 36 | - | - | |
| Mepo2g02833 | 277 | PANTHER | RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING | 70 | 227 | - | - | |
| Mepo2g02833 | 277 | FunFam | RING/U-box superfamily protein | 169 | 243 | - | - | |
| Mepo2g02833 | 277 | CDD | RING-H2_SIS3 | 183 | 229 | - | - | |
| Mepo2g02833 | 277 | SMART | ringv_2 | 184 | 226 | IPR011016 | GO:0008270 | |
| Mepo2g02833 | 277 | Pfam | Ring finger domain | 184 | 226 | IPR001841 | - | |
| Mepo2g02833 | 277 | SUPERFAMILY | RING/U-box | 176 | 232 | - | - | |
| Mepo2g02833 | 277 | ProSiteProfiles | Zinc finger RING-type profile. | 185 | 226 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mepo2g02833 | Mepo-Chr2 | 38036059 | 38037825 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mepo2g02833 | 86 | 269 | C3H Transcription Factor Family | AT3G58720 | 43.684 | 1.71e-39 | 136 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mepo2g02833 | - | - | psat:127107286 | 447.973 |