Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g02729 ATGTCGCTGCAAACTCTGAAGGAATTAACACTGAGACACTGCACAACCCAACAGTCACAATCCCTTCTCCGCGATTTCGATTCCAACTTCCCAATCAACAGAAAACCCCCCAAATCCTCTCTTGCCCATCACCTTCGTCTCCTTGAAGACCCTGACGACCCACCTTTTCAGCCTCCCAATTTCCTTTCCCAACAACAAGTAAAACTAGATGAAGAAGAAGAAGAGGCAGAGGCAGAGGCAGAGATAAAGTGTGTGAAATTCAGTTCTGTTAAATCCTCTCAGATTCAATTTGATCATACTGGACCCTTTGAGCCTTTGATTTTGTCTTCTCATGGTGAACTTCCTTTACTTCAGGTTCCTGCATCTATAAACTGTAGACTGCTTGAGCATCAAAGAGTGGGAGTGAAGTTTCTGTATGATTTGTACAAGAATAATAAGGGAGGCATCCTTGGAGATGACATGGGTCTTGGAAAGACCATTCAAACAATAGCATTTCTTGCTGCCATATTTGGTAAAGAAGGAAACTCCATTCTTAGCGAGACGCGAGTGGAGAAAAGAGACCCTGTATTAATAATTTGCCCATCATCCATTATTCAAAACTGGGAGAGTGAATTCTCTAAGTGGTCCAACTTCAGCGTTGCCATTTATCACGGCGCAAACCGGGATTTGATATATGATAAATTGGAAGCAAATGGAGTCGAGGTACTTATTACCAGTTTTGACACTTACAGGATTCACGGCAACAGTTCCTTGTCAGATATACAGTGGAACACTGTGATTATTGATGAGGCTCATCGGCTTAAGAATGAGAAATCAAAACTCTATAAAGCATGTTTAGAAATTAAAACCCTGCGACGATATGGTCTTACTGGGACCGTAATGCAAAATAAGATCTTAGAATTGTTCAATATCTTTGATTTAGTTGCACCTGGATCCCTTGGAACGCGTGAACACTTCCGTGAGTTTTATGATGAACCCCTTAAACATGGTCAGAGGTCAACTGCGCCTGATAGATTTGTCCAAATTGCTAATAAGAGAAAACAACACCTTGTATCAGTTCTTAATAAATATATGTTGAGAAGGACAAAGGAAGAGACCATAGGGCATCTTATGATGGGGAAGGAAGATAACATTGTTTTTTGTGCAATGAGTGATTTGCAAAAACGCATTTATAGGAGAATGATCCAGCTTCCTGACATTCAGTGCCTTATAAACAAGGACCTACCTTGTAGTTGTGGTAGCCCTCTCACTCAAGTTGAATGTTGCAAAAGGACTGTACCAGATGGAGCTATTTGGCCTTACCTTCACAAAGATAACCTCAATGATGGATGTGATTCATGCCCCTATTGTATTGTCCTTCCATGCCTTGTCAAGCTACAACAGATAAGCAATCACCTTGAGCTGATTAAGCCAAACCCCAAAGATGACCCTGACAAACAAGTTAAAGATGCAAAGTTTGCTGCTGCTGTCTATGGCCCAGACATTGACTTAGTTGGTGGGAGCATGCAGAATGAGAGTTTCCTGGGTCTAAGTGATGCAGAACATTGTGGCAAAATGCGAGCACTTGAAAAGCTATTGTTGTCATGGTTTTCACATGGTGACAAAGTTCTTTTGTTTAGCTATTCTGTAAGGATGCTGGACATACTGGAGAAATTTATCATAAGAAAAGGCTACTGCTTCTCAAGACTTGATGGGTCCACTCCAACTAATTTACGTCAGTCTCTGGTTGATGATTTCAACTCTAGTCCAAGCAAACAAGTGTTCCTGATATCAACTCGTGCTGGTGGGCTAGGATTGAACCTTGTCAGTGCGAACCGTGTCGTAATATTTGATCCCAACTGGAATCCCTCACAAGACTTACAGGCTCAGGACAGGTCCTTTCGATATGGACAGAAACGGCATGTTGTGGTATTCCGTCTTCTCTCAGCTGGTTCACTTGAAGAACTAGTTTATTCTCGTCAGGTGTACAAGCAGCAGCTCTCAAACATTGCTGTCTCTGGGAAGATGGAAAAACGATATTTTGAAGGTGTCCAGGATTGCAAAGCATTTCAAGGGGAGCTTTTTGGAATTTGCAATTTATTTCGAGATTTATCTGATAAACTATTTACCAGTGAGATCGTTGAATCGCATGAGACGAATAAAAAAGACGGCCTTGAAACAGAACAACAGAAAAAAATAAATATTTCAGAAGAAACAAATTTGTTAGTATCAGAGTCGGAAACCAGGTCATGTTCTGAATCTGTGAGGGCTACAAGTAAACCAGATATTGAATTTGAAGACGTCGGCATTGTCTACGCTCATCGCAATGAAGACATTGTCAACTCCCGACCAGTGATTCAAAGGCAGTTATCTACCAGCAGCACCTCTTCAAGTGATGGCCAAAGCGAGCCAAGCAGCACTTTAGTCCATGAAAGGAAGAAACCAGATTGTGTACCTAAAAAACTGATCGATGAAAGGAAGAGAGCCCAATTTAGCCTCCTCGCTGAGAGTATGGGCATGGAAGAGCTTGCATTTAGTAAATGGTTACTATCAGCCACTCCAGTAGAGAGAGAAAAGGTGCTTATAGACTACAAGAAGAAAAACAAAAAGCTTAAAGGTTGA 2601 0.4145 MSLQTLKELTLRHCTTQQSQSLLRDFDSNFPINRKPPKSSLAHHLRLLEDPDDPPFQPPNFLSQQQVKLDEEEEEAEAEAEIKCVKFSSVKSSQIQFDHTGPFEPLILSSHGELPLLQVPASINCRLLEHQRVGVKFLYDLYKNNKGGILGDDMGLGKTIQTIAFLAAIFGKEGNSILSETRVEKRDPVLIICPSSIIQNWESEFSKWSNFSVAIYHGANRDLIYDKLEANGVEVLITSFDTYRIHGNSSLSDIQWNTVIIDEAHRLKNEKSKLYKACLEIKTLRRYGLTGTVMQNKILELFNIFDLVAPGSLGTREHFREFYDEPLKHGQRSTAPDRFVQIANKRKQHLVSVLNKYMLRRTKEETIGHLMMGKEDNIVFCAMSDLQKRIYRRMIQLPDIQCLINKDLPCSCGSPLTQVECCKRTVPDGAIWPYLHKDNLNDGCDSCPYCIVLPCLVKLQQISNHLELIKPNPKDDPDKQVKDAKFAAAVYGPDIDLVGGSMQNESFLGLSDAEHCGKMRALEKLLLSWFSHGDKVLLFSYSVRMLDILEKFIIRKGYCFSRLDGSTPTNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPSQDLQAQDRSFRYGQKRHVVVFRLLSAGSLEELVYSRQVYKQQLSNIAVSGKMEKRYFEGVQDCKAFQGELFGICNLFRDLSDKLFTSEIVESHETNKKDGLETEQQKKINISEETNLLVSESETRSCSESVRATSKPDIEFEDVGIVYAHRNEDIVNSRPVIQRQLSTSSTSSSDGQSEPSSTLVHERKKPDCVPKKLIDERKRAQFSLLAESMGMEELAFSKWLLSATPVEREKVLIDYKKKNKKLKG 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g02729 866 MobiDBLite consensus disorder prediction 781 807 - -
Mepo2g02729 866 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 521 674 IPR001650 -
Mepo2g02729 866 Pfam Helicase conserved C-terminal domain 518 630 IPR001650 -
Mepo2g02729 866 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 113 361 IPR027417 -
Mepo2g02729 866 CDD SF2_C_SNF 515 641 - -
Mepo2g02729 866 Gene3D - 108 360 IPR038718 -
Mepo2g02729 866 Gene3D - 373 746 IPR027417 -
Mepo2g02729 866 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 365 682 IPR027417 -
Mepo2g02729 866 FunFam DNA excision repair protein ERCC-6-like 2 isoform X1 109 360 - -
Mepo2g02729 866 SMART helicmild6 547 630 IPR001650 -
Mepo2g02729 866 Pfam SNF2-related domain 144 401 IPR000330 GO:0005524|GO:0140658
Mepo2g02729 866 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 139 311 IPR014001 -
Mepo2g02729 866 PANTHER SNF2/RAD54 FAMILY MEMBER 33 826 - -
Mepo2g02729 866 SMART ultradead3 123 319 IPR014001 -
Mepo2g02729 866 Coils Coil 62 82 - -
Mepo2g02729 866 MobiDBLite consensus disorder prediction 781 798 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g02729 Mepo-Chr2 37113684 37119649 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g02729 146 660 RAD5 or RAD16-like Gene Family AT1G02670 26.288 2.26e-34 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mepo2g02729 SNF2_N 1.6e-55 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g02729 K20098 - gmx:100781003 1328.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo2g02729 2 37113684 37119649 Mepo2g02729 2 37113684 37119649 ECH