LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mepo2g02698	ATGACAGCTGGGATCGCGAATTATGTATTACCACCGTTCCTAAGCAAAACCTACGATATGGTTGATGACTCTTCAACCGAATCGATCGTTTCATGGGGTCAAAACGACAACACCTTTGTTGTTTTCAATTCCACCGATTTCTCTAAACACATCTTGCCTAAATATTTCAAACACAACAACTTCTCCAGTTTCGTCAGACAATTGAACACCTACGGTTTTAGAAAGGTTGACCCCGACCGCTGGGAATTTGCTCATGAAGGATTTTTAAGGGGTCAAAAACATTTGTTGAAGAATATCAATAGGCGGAAATCTACTCATGCAAATGGTAATAATCAACAGCTATCTAAGCCGCAGAACCCACCTGTTGGGTCATGTGTGGAAGTGGGTAAGTTTGGGCTTGATGAAGAGGTTGAAAGACTGAAAAGGGATAAGAATGTTCTTATGCAGGAACTTGTTAAGTTAAGACAGCAACAACAATCAACGGATAACCAATTGGTAAATGTTGGGCAACGTGTGCAAGTGATGGAGCAGCGCCAGCAACAGATGATGTCGTTCTTAGCAAAGGCCATGAACAGTCCGGGCTTTATGGCTCAATTTTCACAGCAGCAGAACGAAAGTAATAGACATGTTACCGCAGGTAAAAAGAGGCGGCTCCAGGGGCAGGAAGAAGACAGTTTAGCCACCAAGAATCCTCATAATCCTCTTGATGGTCGTGTTGTTAAGTACCAGCCTTCGATTAATGAGGCTGCAAAAACATTATTTAACCAGATGTTGCAAATGAACAGTTCTGCAAGGGTGGATTCCTCCATCAAGAACCTGGATGCATTCCTTATTGACGATGTTCCTTCAGCCATTCCATTAGATAGCAGTAGTTCGTCCACCCAAGTTTCTGGTGTAACACTTTCTGAGGTTCCACCTATTTCTGGGCAGTCATGTATAGCAGTAGAATCTCAGTTTCCTGTAAGTTGTATGACCAATAGCATGTCTGAGGTACAATCTTCACCTGCTGTGTTGACTGACTGTGTCAAAACCGCTGAATTTCCCGAGTTTACAACAGCACACCAAGACAATATTTTGGATTTTGGTGAAGTTCAAGGACTGGCTACAGAAAGCAGCTTCATGAATCCTGATCAAAATTTTGTGGGGTCCGTCGGTGAGAATGATGAGGAATTGGATGTGATATCAGCTGTTTTGGATGGGACACATTCTTTGGAAGCTGGTGCTTTTTCTTCTGATGCGAATGAAAATTCCAAGCTTCCAGGAATCAACGATGAATTCTGGGAACAATTTTTTATGCCAAGCCCACTTACCGGAGACACAGACGAAGTTAAAGGCAGTTCTCTAGGATATGGTTTGACTAAAGACCAGGAATTGTCATTAGCAAAGAAGATTCAACAAGAAAAGATGGATAAGATACAGCACATGGACCATCTTGCTCAACAGATGGAACTTCTTGCATCGGATTCAGCATTGTGCATATAA	1482	0.4231	MTAGIANYVLPPFLSKTYDMVDDSSTESIVSWGQNDNTFVVFNSTDFSKHILPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFAHEGFLRGQKHLLKNINRRKSTHANGNNQQLSKPQNPPVGSCVEVGKFGLDEEVERLKRDKNVLMQELVKLRQQQQSTDNQLVNVGQRVQVMEQRQQQMMSFLAKAMNSPGFMAQFSQQQNESNRHVTAGKKRRLQGQEEDSLATKNPHNPLDGRVVKYQPSINEAAKTLFNQMLQMNSSARVDSSIKNLDAFLIDDVPSAIPLDSSSSSTQVSGVTLSEVPPISGQSCIAVESQFPVSCMTNSMSEVQSSPAVLTDCVKTAEFPEFTTAHQDNILDFGEVQGLATESSFMNPDQNFVGSVGENDEELDVISAVLDGTHSLEAGAFSSDANENSKLPGINDEFWEQFFMPSPLTGDTDEVKGSSLGYGLTKDQELSLAKKIQQEKMDKIQHMDHLAQQMELLASDSALCI	493

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mepo2g02698	493	Pfam	HSF-type DNA-binding	13	102	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Mepo2g02698	493	Gene3D	-	6	103	IPR036388	-
	Mepo2g02698	493	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	11	288	IPR027725	-
	Mepo2g02698	493	SMART	hsfneu3	9	102	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Mepo2g02698	493	FunFam	Heat shock transcription factor 1	6	103	-	-
	Mepo2g02698	493	SUPERFAMILY	"Winged helix" DNA-binding domain	10	102	IPR036390	-
	Mepo2g02698	493	PRINTS	Heat shock factor (HSF) domain signature	51	63	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Mepo2g02698	493	PRINTS	Heat shock factor (HSF) domain signature	13	36	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Mepo2g02698	493	PRINTS	Heat shock factor (HSF) domain signature	64	76	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Mepo2g02698	493	Coils	Coil	130	157	-	-
	Mepo2g02698	493	ProSitePatterns	HSF-type DNA-binding domain signature.	52	76	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Mepo2g02698	493	MobiDBLite	consensus disorder prediction	201	237	-	-
	Mepo2g02698	493	MobiDBLite	consensus disorder prediction	209	223	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mepo2g02698	Mepo-Chr2	36757640	36760542	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mepo2g02698	10	489	HSF	AT5G16820	48.594	2.38e-135	398

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Mepo2g02698		HSF_DNA-bind	2.6e-32	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mepo2g02698	K09419		-	gmx:100793665	529.635