LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mepo2g02552	ATGAGCTTACCATCATCGCAGAAGATGATTACACCTCCATTACACATGGAAAACGATGATGATTACTCCTCCATTTCAGAAGATGGCAATCAGTTCTCGGTCTTGAGTGAATCCGACATAAAGCATCTTCAAAACAATGACATCAATCATATTTTATCAATTCTTTCAATATCAAGACCACTTGCTTGCCTTTTACTCACCAACTACAATTGGAACACTACTCAAGTTTTGGAATCATGGTTTGATAACCTACAAAAAGTTCAAAAAACCATAGGCCTGTCCAACCAACACCATTTAGAATCAGGGTTTCCAAACTCATCACAAACTCTCACCATGTGTGATATATGTTTTGAAACCTTCTCTAGAGATGAGATTAGGTCATCATGGTGTGGTCATCCTTTTTGCATCAACTGCTGGAATCAATATGTCGATATAAACATCGATGATCTTAACTGTTTCAAACTTAGATGCCCTCAACCTTCTTGTAATGCAGCTGTTGATCAAGACATGATTCATCAACTTGCAAGTAAGTCAAGAAAGATTAAATATGATCAATTTTTCTTTCGGTCTTATGTGGAAAATAACAGTGATAGGAAATTGAAGTGGTGTCCTGCTCCAAATTGTTGTTGTGCTATAAGTTATGATCAATTATCAGAGTCTAGCTCTAGATTAAATTATGATGTTACATGTCATTGTTATCATAGCTTTTGTTGGAATTGTGGTGAAGAAGCTCATACACCTGTGGATTGTGAAACTTTTGTTAAATGGAGGAGAAAGATTGGTTCTGATTCTGAGGTTACAAATAATAATTGGATTATTGCTAACACCAAACCATGTCCTAATTGCAAAATAGCTATTGAGAAAAACCAAGGGTGCAGACACATGAGGTGCAGATTATGTAAGTTTTCCTTTTGCTGGTTATGTCTTCGTGATATGTCTATATGTATGAAAAAAGGTTGCAGCGGCACTTTAAATAATGTGCAAGTTTGGCATTATCATCAAGAGATATATGATGATGAAATGCAAAGAACCAATGCAAAAAATTGTTTGGATAAGTACACTTACTATGAAATTTTAAGAAAAAAGGCCCTTCAAAATTTGATTGAGATGAATAGTACTGCATATATAAAGAGTCTGGGTATATCATGGATAAAGACAGACACTTATTTTGATTTCATAAAGGATGCATTGAAACAATTGGTTGAATGCAGAAGAGTTCTCAAATGGGCTTATGTATATGGATATTATCTTCCTGAGAATGAAAATGCTAGGATTGAGTTTTTTGAGCATATAGAAAGCATAGCTCAGGTTGCTTTGGAGAGGCTTCGTCATTGTGCAGAAAGTGAATTAAGAAAGGTTCTACACGATGGATCAGAGGAAGAATTTTGTGATTTTCGGTTGAAGCTAATCACTCTGACTAGGGTGGCTAAAAGTTATTTTATGAATTTGGTTAGTGGATTAGAGAATGGTTTAGATGTTGTGTGTGTGAAAAACTACACTGGGGTGAAAAGGGCGTTAAGTGAAATTGACGACGACTCGTATAAGAAGCTGAATACGGGAAGGTGA	1566	0.3563	MSLPSSQKMITPPLHMENDDDYSSISEDGNQFSVLSESDIKHLQNNDINHILSILSISRPLACLLLTNYNWNTTQVLESWFDNLQKVQKTIGLSNQHHLESGFPNSSQTLTMCDICFETFSRDEIRSSWCGHPFCINCWNQYVDINIDDLNCFKLRCPQPSCNAAVDQDMIHQLASKSRKIKYDQFFFRSYVENNSDRKLKWCPAPNCCCAISYDQLSESSSRLNYDVTCHCYHSFCWNCGEEAHTPVDCETFVKWRRKIGSDSEVTNNNWIIANTKPCPNCKIAIEKNQGCRHMRCRLCKFSFCWLCLRDMSICMKKGCSGTLNNVQVWHYHQEIYDDEMQRTNAKNCLDKYTYYEILRKKALQNLIEMNSTAYIKSLGISWIKTDTYFDFIKDALKQLVECRRVLKWAYVYGYYLPENENARIEFFEHIESIAQVALERLRHCAESELRKVLHDGSEEEFCDFRLKLITLTRVAKSYFMNLVSGLENGLDVVCVKNYTGVKRALSEIDDDSYKKLNTGR	521

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mepo2g02552	521	ProSiteProfiles	Zinc finger CCHC-type profile.	237	250	IPR001878	GO:0003676\|GO:0008270
	Mepo2g02552	521	ProSiteProfiles	TRIAD supradomain profile.	109	324	IPR044066	-
	Mepo2g02552	521	Pfam	IBR domain, a half RING-finger domain	182	250	IPR002867	GO:0008270
	Mepo2g02552	521	Pfam	IBR domain, a half RING-finger domain	274	311	IPR002867	GO:0008270
	Mepo2g02552	521	SMART	ring_2	113	160	IPR001841	-
	Mepo2g02552	521	SMART	ring_2	210	282	IPR001841	-
	Mepo2g02552	521	SMART	ibrneu5	181	250	IPR002867	GO:0008270
	Mepo2g02552	521	SMART	ibrneu5	254	315	IPR002867	GO:0008270
	Mepo2g02552	521	SUPERFAMILY	RING/U-box	271	313	-	-
	Mepo2g02552	521	PANTHER	RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING	39	409	IPR031127	GO:0004842\|GO:0016567
	Mepo2g02552	521	FunFam	RBR-type E3 ubiquitin transferase	107	195	-	-
	Mepo2g02552	521	ProSiteProfiles	Zinc finger RING-type profile.	113	158	IPR001841	-
	Mepo2g02552	521	CDD	BRcat_RBR_ANKIB1	189	259	-	-
	Mepo2g02552	521	SUPERFAMILY	RING/U-box	108	193	-	-
	Mepo2g02552	521	Gene3D	-	246	493	-	-
	Mepo2g02552	521	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	107	196	IPR013083	-
	Mepo2g02552	521	SUPERFAMILY	RING/U-box	191	257	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mepo2g02552	Mepo-Chr2	35198925	35200815	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mepo2g02552	32	494	ARIADNE family	AT1G65430	46.835	1.61e-131	392

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mepo2g02552	K11968		-	mtr:11439693	592.423