Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g02550 ATGGAACAACACTTCTATGTTTTGAGTGAATCTGACATAAAGCGCCTTCAAGATGATGACATCAATCATCTTTCATCAATTCTCTTCGTATCAAGACCAGTTGCATGTCTTTTACTTTCCCATTACAACTGGAATGTCACTCAAGTTTCAGAATCATGGTTTGATAACCAACAAAAAATCCGTAAAGCCATAGGCTTATCGAACGAAACCCAAATAGAATTAGGGTTTGCATACTCATCACATGCTTCCATTTGTGGTATTTGCTTAGAAACCTTTTCTAGCGATGAGATTAGATCATCATGGTGTCGTCATTCATTTTGCATCAATTGCTGGAATCAATATGTTGATATGCATATCGATGATCATAACTGCTTCAAACTCAAATGCCCCGAGCCTTCTTGTAATGCAGCTGTAGATGAAGACATGATTCAACAATTAGCAAGTGAGTCAAGAAAGATTAAATACGATCAATTTTTCTTTCGTTCTTATGTTGAAAACAACAATAACATGAAATTGAAGTGGTGTCCTGCTCCAGATTGTTGTCATGCTATAAGTTATGAATTACCATATCATCACAATTCTGGTAGTTCTAGAATAAATTATGATGTTAAATGTCTTTGTTATCATAGCTTTTGTTGGAATTGTGGTGAAGAAGCTCACACACCTGTTGATTGTGAAATTGTTGCTAAATGGATGAAGAAGACGAGTTCTGAATTTAAGATCACTACTAGCGGTTGGATTATTGCTAACACAAAAAGATGTCCTAAATTTAAGACACCCATCGAGAAAAACAATGGATGTAATCATATGTCATGCAAATGTGGGATCCAATTTTGCTGGCTATGTCTCCGCGATTTCTCTAATTGTCGTGATGGTGTCAATTGCGCGCAAGTTCAGGAATTTCAAGAGTTATTTGGAGATGAAATGCAAAGAAACCATGCAAAAAATCATTTGGATAGGTACACTTACTACCATCAAGGTTGGGCAAACAATGAAATTTCAAGAAAAAAGTCCAGAACATATTTTGATAATTTCATGGTAAAGGATGCATTGAAACATATAGTTGAATGCAGACGAATTCTCAGATGGAGTTATGTATATGGATACTATCTTCCGGAGGATGAAAATGCTAAGATTGAGTTTTTTGATCACATCCAAGGCATAGCTCAAGTTGTTTTGGATAGGCTTCATCATTTTGCAGAAAATGGATTAAGAAAGCAACTTCTAAATAATGGTTCAGAAGAAGAATTTTGTGATTTTCGGATGAAGCTAACCACTAGGACTCGAGTGGCTAAAAATTATTTCATGAATTTGGTAGAAGAATTAGATAACGGTTTAGAGGTAGTGCGTGTGAAAAACTATGTTGAGGTTTAA 1374 0.3537 MEQHFYVLSESDIKRLQDDDINHLSSILFVSRPVACLLLSHYNWNVTQVSESWFDNQQKIRKAIGLSNETQIELGFAYSSHASICGICLETFSSDEIRSSWCRHSFCINCWNQYVDMHIDDHNCFKLKCPEPSCNAAVDEDMIQQLASESRKIKYDQFFFRSYVENNNNMKLKWCPAPDCCHAISYELPYHHNSGSSRINYDVKCLCYHSFCWNCGEEAHTPVDCEIVAKWMKKTSSEFKITTSGWIIANTKRCPKFKTPIEKNNGCNHMSCKCGIQFCWLCLRDFSNCRDGVNCAQVQEFQELFGDEMQRNHAKNHLDRYTYYHQGWANNEISRKKSRTYFDNFMVKDALKHIVECRRILRWSYVYGYYLPEDENAKIEFFDHIQGIAQVVLDRLHHFAENGLRKQLLNNGSEEEFCDFRMKLTTRTRVAKNYFMNLVEELDNGLEVVRVKNYVEV 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g02550 457 SUPERFAMILY RING/U-box 82 166 - -
Mepo2g02550 457 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 165 IPR013083 -
Mepo2g02550 457 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 20 363 IPR031127 GO:0004842|GO:0016567
Mepo2g02550 457 SUPERFAMILY RING/U-box 155 232 - -
Mepo2g02550 457 ProSiteProfiles Zinc finger RING-type profile. 85 130 IPR001841 -
Mepo2g02550 457 Gene3D - 221 449 - -
Mepo2g02550 457 SUPERFAMILY RING/U-box 241 300 - -
Mepo2g02550 457 SMART ibrneu5 153 225 IPR002867 GO:0008270
Mepo2g02550 457 SMART ibrneu5 240 295 IPR002867 GO:0008270
Mepo2g02550 457 ProSiteProfiles TRIAD supradomain profile. 81 299 IPR044066 -
Mepo2g02550 457 CDD BRcat_RBR_ANKIB1 161 234 - -
Mepo2g02550 457 ProSiteProfiles Zinc finger CCHC-type profile. 212 225 IPR001878 GO:0003676|GO:0008270
Mepo2g02550 457 FunFam RBR-type E3 ubiquitin transferase 79 167 - -
Mepo2g02550 457 Pfam IBR domain, a half RING-finger domain 154 225 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g02550 Mepo-Chr2 35189727 35191100 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g02550 2 449 ARIADNE family AT1G65430 43.035 6.89e-128 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g02550 K11968 - mtr:11439693 883.634