LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mepo2g02543	ATGCCTAAATCAAGCAAGAAATCCGCTGTCAAAGTTGATGCTGCTCCTGTTGTTGTTGCTCCAGTGAAGTCTGGAAAGAAAGGCAAGAGGCAGGCTGAGGAAGAAGTCAAGGCAGTGAGTGCAAAGAAGCAAAAGGTAGAAGAGGTTGCCGCCAAGCAAAAGGTGTTGAAGGTAGTCAAGAAGGAGGAAAGTAGTTCTGAGGAATCATCTGATGAATCTGAGGATGAGAAACCTGTTGCAAAAGCTCCTGCACCTTCAAAGAAGACCCCAGCTAAAAATGGGAATGTGAAGAAAGCCCAGCCAGAGACCACTTCAGAGGAATCTGACTCTGATGACAGCTCCTCTTCCGATGAGGAAGAAGTGAAAAAACCCGTGTCTAAAGCCGTTCCATCTAAAAATGGGAGTGCACCTGCAAAGAAAGCTGATACTTCTGAAGAAGAAGATTCTGATGAATCATCTGATGAAGATGAGAAACCTGCAGCAAAAGCTGTTCCTTCCAAAAATGGAAGTGTATCCGCAAAGAAAGATGATAGTTCTTCCGATGAAGACTCTGATGAATCTTCTGACGAAGAAGATAAGAAACCTGCAGCAAAAGCCTCTAAAAATGTGAGTGCACCCACAAAGAAAGCTGCAAGTTCTTCTGATGAAGAATCCGATGAAGAATCTGATGAAGAATCCGATGAAGAAGATGCAAAGCCTGTGTCTAAGCCTGCTGCTGTTGCAAAAAAGAGTAAGAAAGATGGCTCAGATTCTGATGATGAAGATGATGATAGCAGCTCTGACGAAGAGAAACCTGTGGCTGCTAAGAAAGAGGTTAGTGAATCGGAGAGTGATTCGTCTGATGACGAGGATAAGATGAATGTTGACAAGGATAGTTCCGACTCTGAGAGTGAGGAGGAGAGTGAGGATGAAACATCGAAAACACCTCAGAAAAAGATCAAGGACGTGGAGATGGTTGATGCTGGCAAATCTGGGAAAAAAGCTCCTAATACCCCAGCTACACCAAATGAGAACAGTGGCTCAAAGACATTATTTGTTGGGAACCTGTCCTTCAGCGTCCAACGTTCTGACATAGAAAATTTCTTCGAAGGTTGCGGAGAGGTTGTTGATGTACGTCTTGCTACGGATGAGGATGGAAAGTTTAAAGGCTTTGGACATGTTGAGTTTGCAACTGCAGAGGCAGCCCAAAGCGCACTTGAGATGAATGGGCAAGAACTGTTGCAACGTGCTGTCCGACTTGATTTAGCTCGGGAGAGGGGTGCATTTACTCCTAATAATAACAGTAACTACTCAGCCCAAAGTGGTGGAAGAGGCCAGTCTCAAACAGTATTTGTCAGGGGTTTTGATAAGAATCTTGGAGAGGATGAGATAAGAGCTAAATTGATGGAGCATTTTGGTGGTACTTGTGGGGAACCTACAAGGGTGTCGATCCCAAAAGATTTTGAATCTGGTTATTCCAAGGGGTTTGCATACATGGACTTCAAAGATTCTGACAGCTTTAGCAAAGCTCTTGAACTTCATGAAAGTGAACTTGATGGTTATCAGTTGTCAGTGGATGAAGCCAAACCTAGAGATAGTCAAGGTTCTGGTGGTAGAGGTGGAGGTGGAAGGAGTGGTGGTGGTCGATTTGGTGGAGGTGGAAGAAGTGGTGGATTTGGTGGCAGGAGTGGTGGAAGAGGAGGAGGTCGATTTGGTGGAAGGGATAGTGGCGGTAGAGGTGGTCGAGGAGGAAGAGGTGGTCGTGGTGGATTCAATAAACCAAGCTTTGCTTCTGAAGGGAAAAAGACTACTTTTGCCGACGACTAG	1806	0.4507	MPKSSKKSAVKVDAAPVVVAPVKSGKKGKRQAEEEVKAVSAKKQKVEEVAAKQKVLKVVKKEESSSEESSDESEDEKPVAKAPAPSKKTPAKNGNVKKAQPETTSEESDSDDSSSSDEEEVKKPVSKAVPSKNGSAPAKKADTSEEEDSDESSDEDEKPAAKAVPSKNGSVSAKKDDSSSDEDSDESSDEEDKKPAAKASKNVSAPTKKAASSSDEESDEESDEESDEEDAKPVSKPAAVAKKSKKDGSDSDDEDDDSSSDEEKPVAAKKEVSESESDSSDDEDKMNVDKDSSDSESEEESEDETSKTPQKKIKDVEMVDAGKSGKKAPNTPATPNENSGSKTLFVGNLSFSVQRSDIENFFEGCGEVVDVRLATDEDGKFKGFGHVEFATAEAAQSALEMNGQELLQRAVRLDLARERGAFTPNNNSNYSAQSGGRGQSQTVFVRGFDKNLGEDEIRAKLMEHFGGTCGEPTRVSIPKDFESGYSKGFAYMDFKDSDSFSKALELHESELDGYQLSVDEAKPRDSQGSGGRGGGGRSGGGRFGGGGRSGGFGGRSGGRGGGRFGGRDSGGRGGRGGRGGRGGFNKPSFASEGKKTTFADD	601

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mepo2g02543	601	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	441	523	IPR000504	GO:0003723
	Mepo2g02543	601	MobiDBLite	consensus disorder prediction	23	341	-	-
	Mepo2g02543	601	Coils	Coil	29	49	-	-
	Mepo2g02543	601	Gene3D	-	424	541	IPR012677	-
	Mepo2g02543	601	MobiDBLite	consensus disorder prediction	262	276	-	-
	Mepo2g02543	601	MobiDBLite	consensus disorder prediction	517	601	-	-
	Mepo2g02543	601	MobiDBLite	consensus disorder prediction	229	250	-	-
	Mepo2g02543	601	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	344	411	IPR000504	GO:0003723
	Mepo2g02543	601	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	443	516	IPR000504	GO:0003723
	Mepo2g02543	601	MobiDBLite	consensus disorder prediction	26	67	-	-
	Mepo2g02543	601	SUPERFAMILY	RNA-binding domain, RBD	440	553	IPR035979	GO:0003676
	Mepo2g02543	601	PANTHER	EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H	188	487	-	-
	Mepo2g02543	601	CDD	RRM1_NUCLs	343	419	IPR034349	-
	Mepo2g02543	601	MobiDBLite	consensus disorder prediction	304	322	-	-
	Mepo2g02543	601	Gene3D	-	266	423	IPR012677	-
	Mepo2g02543	601	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	342	418	IPR000504	GO:0003723
	Mepo2g02543	601	SUPERFAMILY	RNA-binding domain, RBD	330	439	IPR035979	GO:0003676
	Mepo2g02543	601	SMART	rrm1_1	343	414	IPR000504	GO:0003723
	Mepo2g02543	601	SMART	rrm1_1	442	519	IPR000504	GO:0003723

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mepo2g02543	Mepo-Chr2	35136068	35140961	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mepo2g02543	340	517	Eukaryotic Initiation Factors Gene Family	AT4G34110	25.000	6.97e-06	47.4

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mepo2g02543	K11294		-	gmx:100786132	387.882