Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mepo2g02507 | ATGAGCACTCGGACAAGCAGGGTGCCTGTTGGTATCAGAACTAACCGGCGGAGGAAGTCGGCTATTGACCTTGATCTTAACCGAGTACCGGCTGGTGAGAATACGGCTGCTGAGCATTCGACTGCTCAGAATCCGATTGCTGAGAATCCATCTCGTGAGAATCGTGAGACTCAGTTGGGGCCTCAAGAAGTTGAAGTTCATGCTAACCAGCAACAGGAAGTAGAAGTTCAAGCTAATCAGCTACAGCTAGTTGCACAACCTGAACCTACTTTGATTGATGTGGAAGCTATTGATGACGATGATGTTGTTTTATCTTCCCCGAGGGCATTTGCTGAGGCCAAAAACAATTCTCGAAGAAATCGCGGGAGGACTGTAGTTGATGTGGATTTAGTCATGTTTTTTGCAGAAGAGCAGATTAGGTTAAGCAACAATAATCGCAACAAACGCAGACGAGAATCTCCAAAACGATCAATTTTCAACTATGATCTTTATATAAATTTGGACGCCAGCAGCAGCTCTACGATGGAAAGTGTCAAAAAGCCACCTGAGCCTCCAAAGGAACCTGTCTTCACCTGTCCTATATGCATGGGCCCTATGGTTGAAGAAATGTCAACAAGGTGTGGTCATATTTTTTGCAAGTCTTGTATCAAGGCTGCTATAAGTGCTCAGGCAAAATGTCCCACCTGTAGAAAAAAGATTACTCTGAAAGAGCTTATAAGGGTGTTTCTGCCAACAACTACTTGA | 744 | 0.4435 | MSTRTSRVPVGIRTNRRRKSAIDLDLNRVPAGENTAAEHSTAQNPIAENPSRENRETQLGPQEVEVHANQQQEVEVQANQLQLVAQPEPTLIDVEAIDDDDVVLSSPRAFAEAKNNSRRNRGRTVVDVDLVMFFAEEQIRLSNNNRNKRRRESPKRSIFNYDLYINLDASSSSTMESVKKPPEPPKEPVFTCPICMGPMVEEMSTRCGHIFCKSCIKAAISAQAKCPTCRKKITLKELIRVFLPTTT | 247 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mepo2g02507 | 247 | SMART | ring_2 | 192 | 229 | IPR001841 | - | |
| Mepo2g02507 | 247 | MobiDBLite | consensus disorder prediction | 34 | 58 | - | - | |
| Mepo2g02507 | 247 | Pfam | Zinc finger, C3HC4 type (RING finger) | 192 | 229 | - | - | |
| Mepo2g02507 | 247 | SUPERFAMILY | RING/U-box | 191 | 236 | - | - | |
| Mepo2g02507 | 247 | ProSitePatterns | Zinc finger RING-type signature. | 207 | 216 | IPR017907 | - | |
| Mepo2g02507 | 247 | PANTHER | ELFLESS, ISOFORM B | 1 | 246 | - | - | |
| Mepo2g02507 | 247 | ProSiteProfiles | Zinc finger RING-type profile. | 192 | 230 | IPR001841 | - | |
| Mepo2g02507 | 247 | MobiDBLite | consensus disorder prediction | 28 | 58 | - | - | |
| Mepo2g02507 | 247 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 135 | 246 | IPR013083 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mepo2g02507 | Mepo-Chr2 | 34811727 | 34816238 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mepo2g02507 | 1 | 246 | C3H Transcription Factor Family | AT5G48655 | 46.586 | 1.67e-46 | 152 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mepo2g02507 | K22651 | - | cave:132188663 | 228.024 |