Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g02499 ATGTCTTCCATTACCATGTCCCCATCTCTCTCTGAAGGCAAGAAGAAGAAGAAAAACACCAACAAACATACAGAACCAGAAGAACCTCAAAACCAACAAGATTTCATGATCAAACCTGAAAAACTTGCACCTACAATCGACACCTCAAACTGGCCCATTTTGTTGAAAAACTACGACCGCCTCAATGTCCGTACTGGTCACTATACCCCCCTTCCAGCTGGTCACTCACCTCTCAAACGACCCATTGCTGATTATCTGAAATATGGTGTTATCAATCTTGATAAGCCTGCTAACCCTAGTTCTCATGAGGTCGTTGCTTGGATCAAGCGTATTCTTCGTGTCGAGAAGACGGGTCATAGTGGTACTCTTGATCCTAAGGTTACTGGGAATTTGATTGTTTGTATTGACAGAGCAACGAGGTTAGTGAAGTCTCAACAAGGTGCTGGAAAAGAATATGTTTGTATTGCTAGGCTTCATTCTGCTGTTCCTGATGTTGCTAAGGTAGCTCGTGCTCTTGAAACTTTAACTGGTGCTGTTTTTCAAAGACCACCTTTGATTTCTGCTGTTAAGAGACAACTTAGGATTAGAACTATTTATGAAAGTAAGATGCTTGAATATGATGCTGAGAAACATTTAGTTGTGTTTTGGATTTCGTGTGAGGCGGGTACTTATGTTAGGACTATGTGTGTTCATTTGGGTTTAGTTCTTGGTGTTGGTGGTCATATGCAAGAGCTTAGGAGGGTTAGGTCTGGGATTATGGGTGAGAAGGATAATATGGTTACTATGCATGATGTTATGGATGCTCAGTATGTTTACGATAAGGAGAAGAGCGATGAGACTTATTTGAGGAGGGTTGTTATGCCTTTGGAGGTTCTTTTGACTAGTTACAAGAGGCTGGTCGTTAAGGATTCGGCTGTGAATGCTATTTGTTATGGTGCTAAGTTGATGATTCCGGGGTTACTTAGGTTTGAGAATGATATTGAACCAGGTGAGGAGGTTGTGCTTATGACTACTAAGGGTGAAGCTATTGCCCTTGGTATTGCTGAGATGACTACTGCTGTTATGGCTACTTGTGATCATGGTATTGTTGCTAAGATCAAGAGGGTGGTTATGGATAGGGATACTTATCCGAGGAAATGGGGTTTGGGTCCTAGGGCTTCTATGAAGAAGAAGCTGATTGCTGCAGGGAAGCTGGATAAGCATGGGAAGCCAAATGAGAGTACTCCTCAAGAGTGGATGAGGAATGTTGTTTTGCCTACTGGTGGGGACGCCGTGATTGCTGGTATGGCGGCTGCTACTGGAACTGAAGATGTGAAGAAAGAGGTAGCTGATGAAGAGGGTGAGAAGGTCAAGAAGGATGGAGATGGGGAAGGGCGGAAGAGAAAGAAACATGAATCTGCCGATAGCCCTGCTCCGGCTAAGAAGTCCAAAGTTGCTGAAGTGGACGGTGAAGAAAAAGTGAAGACCAAGAAAGTAGATGACGCGGCTGTGGAGGTTGAAGATGAGAAGAAAGAAAAGAAGAAGAAAAAGAAGAAGGATAAAGAGAATGGAGCTGCTGCATCTTCTGATGAGGAGAAGGTTGAAAAGGAGAAGAAAAAGAAGCACAAGGAAAAGGGTGAAGATGGTTCTCCTGAAGTGGAGAAGTCTGAGAAGAAGAAAAAGAAGCACAAGGAAACGAGTGAAGTTGGTTCGCCTGAACTGGACAAGTCTGAGAAGAAGAAAAAGAAGAAAGACAAAGAAGCCAAAGATAATGCTGCAGAGATCAGTAACGGAAAGGATGAGAGCAATGCTGATAGAAGTGAGAAGAAGCACAAGAAAAAGAAAAACAAAGATGCCCAAGAAGAATAG 1848 0.4302 MSSITMSPSLSEGKKKKKNTNKHTEPEEPQNQQDFMIKPEKLAPTIDTSNWPILLKNYDRLNVRTGHYTPLPAGHSPLKRPIADYLKYGVINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSAVPDVAKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKMLEYDAEKHLVVFWISCEAGTYVRTMCVHLGLVLGVGGHMQELRRVRSGIMGEKDNMVTMHDVMDAQYVYDKEKSDETYLRRVVMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEPGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIAAGKLDKHGKPNESTPQEWMRNVVLPTGGDAVIAGMAAATGTEDVKKEVADEEGEKVKKDGDGEGRKRKKHESADSPAPAKKSKVAEVDGEEKVKTKKVDDAAVEVEDEKKEKKKKKKKDKENGAAASSDEEKVEKEKKKKHKEKGEDGSPEVEKSEKKKKKHKETSEVGSPELDKSEKKKKKKDKEAKDNAAEISNGKDESNADRSEKKHKKKKNKDAQEE 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g02499 615 Gene3D PUA domain 48 380 IPR036974 GO:0003723
Mepo2g02499 615 CDD PUA_Cbf5 295 369 - -
Mepo2g02499 615 NCBIfam RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 55 381 IPR004802 GO:0006396
Mepo2g02499 615 SUPERFAMILY PUA domain-like 296 377 IPR015947 -
Mepo2g02499 615 CDD PseudoU_synth_hDyskerin 87 269 - -
Mepo2g02499 615 SMART pua_5 297 371 IPR002478 GO:0003723
Mepo2g02499 615 Pfam DKCLD (NUC011) domain 48 105 IPR012960 -
Mepo2g02499 615 Coils Coil 492 516 - -
Mepo2g02499 615 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 14 575 IPR004802 GO:0006396
Mepo2g02499 615 ProSiteProfiles PUA domain profile. 296 371 - -
Mepo2g02499 615 Gene3D Pseudouridine synthase 81 288 - -
Mepo2g02499 615 SUPERFAMILY Pseudouridine synthase 48 294 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Mepo2g02499 615 SMART DKCLD_2 47 105 IPR012960 -
Mepo2g02499 615 Pfam TruB family pseudouridylate synthase (N terminal domain) 109 225 IPR002501 GO:0006396
Mepo2g02499 615 MobiDBLite consensus disorder prediction 437 615 - -
Mepo2g02499 615 FunFam H/ACA ribonucleoprotein complex subunit CBF5 81 288 - -
Mepo2g02499 615 Pfam tRNA pseudouridylate synthase B C-terminal domain 226 293 IPR032819 -
Mepo2g02499 615 Pfam PUA domain 297 369 IPR002478 GO:0003723
Mepo2g02499 615 MobiDBLite consensus disorder prediction 11 29 - -
Mepo2g02499 615 MobiDBLite consensus disorder prediction 1 35 - -
Mepo2g02499 615 NCBIfam uncharacterized domain 2 292 368 IPR004521 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g02499 Mepo-Chr2 34747846 34750071 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g02499 10 477 NAC Transcription Factor Family AT3G57150 79.787 0.0 736
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g02499 K11131 - gmx:100806355 784.637