Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g02475 ATGAGTGGGTCAAAATTAACTGGGAAGGTGAAATGGTTCAATGATCAGAAGGGGTTTGGATTCATCACCCCTGATGATGGAAGTGAGGAGTTGTTTGTTCACCAATCTCAGATCCAGACCGATGGTTTCCGTTCTCTTGCTGAAGGTGAATCTGTTGAGTATCAGGTTGAGTCTGATTCCGATGGAAGATCCAAGGCTGTTAGTGTCACTGGTCCAGATGGTGCTTCTGTTCAGGGATCGAGACGTGGTGGCGGCGGCGGCGGTGGTTATGAGCGTGGTGGAGGTGGTTATGGTGGAGGCGGTGGTGGTTATGGTGGTGGAGGTGGTGGTTATGGTGGAAGAGGTGGTGGTGGCTATGGTGGTGGTGGAGGTGGTTATGGTGGAGGAGGTGGTGGTTATGGTGGTGGTGGAAGAGGTGGAGGCCGTGGAGGAGGCGGTGGTGGGTGTTACAACTGTGGTGAATCTGGCCACATGGCGAGGGAGTGTACCAGCGGTGGAGGCGGTGGTGGTGGAAGGTATGGTGGGGGTGGTGGTGGAGGCGGTGGCGGTGGAAGCTGCTACAGCTGTGGTGAATCTGGTCATTTTGCAAGAGATTGTCCAACAGGCAGCGCTCGTTGA 618 0.5502 MSGSKLTGKVKWFNDQKGFGFITPDDGSEELFVHQSQIQTDGFRSLAEGESVEYQVESDSDGRSKAVSVTGPDGASVQGSRRGGGGGGGYERGGGGYGGGGGGYGGGGGGYGGRGGGGYGGGGGGYGGGGGGYGGGGRGGGRGGGGGGCYNCGESGHMARECTSGGGGGGGRYGGGGGGGGGGGSCYSCGESGHFARDCPTGSAR 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g02475 205 MobiDBLite consensus disorder prediction 61 75 - -
Mepo2g02475 205 SUPERFAMILY Retrovirus zinc finger-like domains 141 202 IPR036875 GO:0003676|GO:0008270
Mepo2g02475 205 ProSiteProfiles Zinc finger CCHC-type profile. 186 200 IPR001878 GO:0003676|GO:0008270
Mepo2g02475 205 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Mepo2g02475 205 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Mepo2g02475 205 Gene3D - 2 83 IPR012340 -
Mepo2g02475 205 PANTHER COLD SHOCK DOMAIN PROTEIN 2 114 201 - -
Mepo2g02475 205 CDD CSP_CDS 7 71 IPR002059 GO:0003676
Mepo2g02475 205 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Mepo2g02475 205 SMART c2hcfinal6 148 164 IPR001878 GO:0003676|GO:0008270
Mepo2g02475 205 SMART c2hcfinal6 185 201 IPR001878 GO:0003676|GO:0008270
Mepo2g02475 205 Pfam Zinc knuckle 185 200 IPR001878 GO:0003676|GO:0008270
Mepo2g02475 205 Pfam Zinc knuckle 148 164 IPR001878 GO:0003676|GO:0008270
Mepo2g02475 205 SUPERFAMILY Nucleic acid-binding proteins 5 71 IPR012340 -
Mepo2g02475 205 MobiDBLite consensus disorder prediction 49 88 - -
Mepo2g02475 205 Gene3D - 138 171 - -
Mepo2g02475 205 Gene3D - 181 205 - -
Mepo2g02475 205 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Mepo2g02475 205 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Mepo2g02475 205 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Mepo2g02475 205 ProSiteProfiles Zinc finger CCHC-type profile. 149 164 IPR001878 GO:0003676|GO:0008270
Mepo2g02475 205 SMART csp_8 7 72 IPR011129 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g02475 Mepo-Chr2 34521767 34522614 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Mepo2g02475 CSD 3.2e-27 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g02475 - K09250 egr:104420573 158.303