Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g02440 ATGGACTGTGGAAACACCGAACACATGTCATGTTCAGATATCGGACTCTCGGAATGGACGGTGAAGAATTGCAAGATACGGCGCGTGCAACAACACTGCATTCCGAAGGTTATAGAAGGTCGCCATGTAATTGGAATCGATGAGACGGGTAGCGGTAAAACGGAAGCTTTTGCGCTTCCTATTCTTCAACGCCTCGCCGAGCATCCAAAACCTTTCGGTGTGTTTGCTCTCGTGCTGACGCCCACGCGTGAGCTTGCGATTCAGCTGGCGGACCAGTTTTTGGCCCTTGGGTTCTCTCCCCCCCTCAGCCTTACGGTGGTTGACAGTCGTGGAGATACAAAACAGTTGCTCGCCAGGCCTCACCTTGTTATCGCCACTCCCTCGAGACTCAAGGTTTTGCTTCAGGATTATCCTGAAATCGCTCCTATTTTCGCTACTATTAAGTTTCTTGTTTTGGATGAAGCAGACCAACTCCTTGATGTTGGTTTTCAAGAGGAATTGAGTGTTATCTTCCAGTGCTTATCACAAAATCGGCAAAACCTCAATTATCAAGATAACATGTATGCCTTCCAGGCTTGTGAAGGGTCGAAGTTGCGTAAGCATTTGAAGATTAATGAATTCCCGAACGCCGTCCACACGTCGTTTTCAAATCTCGGACTCTCAGAATGGATGGTGCAGTATTGCAAGAAACTCGGGCTGAAAACTCCGCGGCCTGTGCAACAACACTGTATCCCAAAGGTTCTAGAAGGCCGTCATGTAATTGGTATCGATAATACTGGTAGCGGTAAAACTGCAGCTTTTGTTCTTCCTATTCTTCAACGCCTAGCTGAGCATCCGAAACCTTTCGGTGTGTTTGCTCTCGTGCTGACGCCCACGCGTGAGCTTGCGGTTCAGCTGGCGGACCAGTGCTGGGGCTTTGGGTCCTTGTTCCACTTCAATCTTATGGTGGTTCCGGGTGGTATTGAAATTTCTAAGCAGGCAAAACAATTGGTCTCCAGGCCTCAACTTGTCATTGCCACTCCAAGGAGGCTCAAAGTTTTGCTTCAGGATTATCCTGGAATCGCTCCTATTTTCGCTACTACTAAGTTTCTTGTTTTGGATGAAGCAGACCAACTCCTGGATGTTGGTTTTCAGGAGGAATTGAAAGTTATCTTCCAGATCTTACCAGAAAACCGGCAAAACCTCTTCTTTTCAGAAACCATGACTAGTAACCTGCAAAAGATGCGTGACCGTTATCAAGTTAACATGTATACCTTCGAGGCTTGTAAAGGGTTGAAGTTGCTTGACCATTTGAAGTTTAATGAATCCCCGATAGTAGAGCTCTGTGACGGGGATGGTGAAAACGATGAAACGAAGTGGAGTGCTACCACTGGCAGCCACACATGGACTTCTCAAAAAACCACTGGCTTTCGATTCATTCACGATTGCAATACAATGGACATTGACAACGCTGAAAACGCCGATCACACGTCGTTTTCAGATCTCGGACTCTCGAAATGGATGGTGCAGCATTGCAAGAAACTCGGGCTGCAAACTCCTCGGCGCGTGCAACAACACTGCATCCCGAAGGTTCTAGAAGGCCGTCATGTAATTGGTATCGATGAGACTGGTAGCGGTAAAACGACAGCTTTTGTTCTTCCTATTCTTCAACGCCTAGCCGAGCATCCTTTTGATGTGGTTGCTCTCGTTCTGACGCCCACGCGCGAGCTTGCTTTTGAGCTGGCGTGCCAGTTCCGGGGCTTTGGGTCCTTGTTCCACTTCACTCTTATGGTGCTTTCGGGTGGTACTGAAATATGTAAGCAGGAAGAACAATTGGTCGCCAGGCCTCAACTTGTCATTACCACTCCAAGGAGGCTCAAAGTTTTGCTTCAGGATTATCCTGGAATCGCTCCTATTTTTGCTACTACTAAGTTTCTTGTTTTGGATGAAGCAGACCGACTCTTGGATGTTAGTTGTCAGGAGGAATTGAAAGTTATCTTCCAGATCTTACCAGAAAACCGGCAAAACCTCTTCTTTTCAGAAACCATGACTAGTAATCTGCAAAAGATGCGTGACCGTTATCAAGTTAACATGTATACCTTCGAGGCTTGTGAAGGGTTGAAGCTTGACCATTTGAAGATTGATGAAGTATGA 2133 0.4679 MDCGNTEHMSCSDIGLSEWTVKNCKIRRVQQHCIPKVIEGRHVIGIDETGSGKTEAFALPILQRLAEHPKPFGVFALVLTPTRELAIQLADQFLALGFSPPLSLTVVDSRGDTKQLLARPHLVIATPSRLKVLLQDYPEIAPIFATIKFLVLDEADQLLDVGFQEELSVIFQCLSQNRQNLNYQDNMYAFQACEGSKLRKHLKINEFPNAVHTSFSNLGLSEWMVQYCKKLGLKTPRPVQQHCIPKVLEGRHVIGIDNTGSGKTAAFVLPILQRLAEHPKPFGVFALVLTPTRELAVQLADQCWGFGSLFHFNLMVVPGGIEISKQAKQLVSRPQLVIATPRRLKVLLQDYPGIAPIFATTKFLVLDEADQLLDVGFQEELKVIFQILPENRQNLFFSETMTSNLQKMRDRYQVNMYTFEACKGLKLLDHLKFNESPIVELCDGDGENDETKWSATTGSHTWTSQKTTGFRFIHDCNTMDIDNAENADHTSFSDLGLSKWMVQHCKKLGLQTPRRVQQHCIPKVLEGRHVIGIDETGSGKTTAFVLPILQRLAEHPFDVVALVLTPTRELAFELACQFRGFGSLFHFTLMVLSGGTEICKQEEQLVARPQLVITTPRRLKVLLQDYPGIAPIFATTKFLVLDEADRLLDVSCQEELKVIFQILPENRQNLFFSETMTSNLQKMRDRYQVNMYTFEACEGLKLDHLKIDEV 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g02440 710 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 34 181 IPR014001 -
Mepo2g02440 710 Gene3D - 4 204 IPR027417 -
Mepo2g02440 710 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 205 418 IPR027417 -
Mepo2g02440 710 Pfam DEAD/DEAH box helicase 238 407 IPR011545 GO:0003676|GO:0005524
Mepo2g02440 710 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 521 694 IPR014001 -
Mepo2g02440 710 Pfam DEAD/DEAH box helicase 28 190 IPR011545 GO:0003676|GO:0005524
Mepo2g02440 710 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 244 419 IPR014001 -
Mepo2g02440 710 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 640 648 IPR000629 -
Mepo2g02440 710 SMART ultradead3 22 207 IPR014001 -
Mepo2g02440 710 SMART ultradead3 509 708 IPR014001 -
Mepo2g02440 710 SMART ultradead3 232 434 IPR014001 -
Mepo2g02440 710 Gene3D - 479 694 IPR027417 -
Mepo2g02440 710 Gene3D - 205 419 IPR027417 -
Mepo2g02440 710 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 490 518 IPR014014 GO:0003724
Mepo2g02440 710 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 213 241 IPR014014 GO:0003724
Mepo2g02440 710 Pfam DEAD/DEAH box helicase 515 682 IPR011545 GO:0003676|GO:0005524
Mepo2g02440 710 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 180 IPR027417 -
Mepo2g02440 710 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 200 411 - -
Mepo2g02440 710 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 476 693 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g02440 Mepo-Chr2 34175456 34179833 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g02440 489 676 Eukaryotic Initiation Factors Gene Family AT3G13920 32.979 1.06e-19 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g02440 K14778 - gmx:100798597 289.271