Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g02119 ATGAACAACCCTAGGAAAATTGCTTGCCGCCTTGGAGACCGTTGCTTTGATGAGCTTTCATGTCCTTTTGCTCATACTTCCAGAACCGAGACCCTTACTCTGTGTCCAAATCTTGCAAGGGATATGGTCTGCAAGCTAGGACCCCTGTGCAGATTCAATCATGACGTTGCTCTTTTTGATTGCAGCATTTGCGTTACTAGGGAGTTTCTTTTCAGAAACTCCACTAAACTAGTTGCAGTACCATTACGTTGTGAACACCACTTCTGTTATACTTGCCTCCAAACCTGGACACGTCTTCCCGATTCTAGCCCCCTCGACTACCCCGAACTGTTCACCTGTCCTGTATGCCATACATTATCTGAGCTCTTCATCGTGGGGAGAAAAACTTCTTATTCCCCCACTGAGAAGGAGAGGCTTAGATTGACACGCATACCGCTGAAGACGAGGTTACCATCGTGTTTTGCTAAGGAATATGATTTGCACGTTGATGACTATGTCATGTTGCGTGATGCAAACAAGAATATGTTTGAGGTTAAAGTCCACAAGAAATATGGCAAGGTGTACTTCAGGGATGGTTGGATAGGGTTGAAAGATTTCTATAAGATTGGCCTTGGTGCATGGGTCACCCTTACCTATATCGAATCAAAACCTTCTGCACATGACCATAAAAGACAGATCAGGAGTAACAACTGTCTTCCTCCTATATCAAAGATGATCATTCAAAGCGATGGCAGACCAGTGATGCGGTTTTACCGCACATTTGTTCATATATTGACATCATCTGACATTGATTCTGGATATCTGGTTGTGCCTTGGTTTGGTTTCGGCGAGGATGCGTTGCCCACAATTGCGACTCGGCTTTCTATCATTGATCATTATGGTAATATTTTGAAGTGTGATATGGTATTCATCAGGATGGAAGATACTGTTTTTTGCAGAATTGGAGGTGACTGGAAACTTTTATGCTCTGCGCGTAGATTAGTCAAAGGTCATGCTATAAAGTTTGCTGTCACCGAAAATACAAGGAATGGTATCCTTCATATAAGGCACGTTCCTTTGCAGTGTGTTCATAGAGGTTTCGTGAAATCGATGAATACTAGCAATGCTAGGCATGTGTATCAGACTCGGGCCGGTCAGAGAACCCGCTTCAAGGCTTTTGTTGTCGTTGGCCTTGGTGTGAAGTGTAGCAAAGAAGTGGCTACTGCGATTCGTGGTGCTATTATCTTGGTGAAGTTGATCCCGCCTCCGGCAACGAGGTCCGAACCTGAAATGTTAACTCAATCTTCTACACAGGATAAGGAGCTGAAGAGGACATGTTTGGTGTAA 1326 0.4404 MNNPRKIACRLGDRCFDELSCPFAHTSRTETLTLCPNLARDMVCKLGPLCRFNHDVALFDCSICVTREFLFRNSTKLVAVPLRCEHHFCYTCLQTWTRLPDSSPLDYPELFTCPVCHTLSELFIVGRKTSYSPTEKERLRLTRIPLKTRLPSCFAKEYDLHVDDYVMLRDANKNMFEVKVHKKYGKVYFRDGWIGLKDFYKIGLGAWVTLTYIESKPSAHDHKRQIRSNNCLPPISKMIIQSDGRPVMRFYRTFVHILTSSDIDSGYLVVPWFGFGEDALPTIATRLSIIDHYGNILKCDMVFIRMEDTVFCRIGGDWKLLCSARRLVKGHAIKFAVTENTRNGILHIRHVPLQCVHRGFVKSMNTSNARHVYQTRAGQRTRFKAFVVVGLGVKCSKEVATAIRGAIILVKLIPPPATRSEPEMLTQSSTQDKELKRTCLV 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g02119 441 ProSiteProfiles Zinc finger RING-type profile. 61 117 IPR001841 -
Mepo2g02119 441 SMART ring_2 61 116 IPR001841 -
Mepo2g02119 441 SUPERFAMILY DNA-binding pseudobarrel domain 148 215 IPR015300 -
Mepo2g02119 441 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 123 IPR013083 -
Mepo2g02119 441 Gene3D - 128 224 IPR015300 -
Mepo2g02119 441 Gene3D - 321 414 - -
Mepo2g02119 441 SUPERFAMILY RING/U-box 58 123 - -
Mepo2g02119 441 ProSitePatterns Zinc finger RING-type signature. 84 93 IPR017907 -
Mepo2g02119 441 SUPERFAMILY dsRNA-binding domain-like 369 410 - -
Mepo2g02119 441 SUPERFAMILY DNA-binding pseudobarrel domain 252 342 IPR015300 -
Mepo2g02119 441 ProSiteProfiles Zinc finger C3H1-type profile. 29 57 IPR000571 GO:0046872
Mepo2g02119 441 Pfam Ribosomal protein S5, N-terminal domain 370 411 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g02119 Mepo-Chr2 30647006 30652243 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g02119 374 420 Cytoplasmic Ribosomal Protein Gene Family AT1G58983 74.074 5.06e-14 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mepo2g02119 Ribosomal_S5 5.1e-09 CL0196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g02119 K02981 - mtr:120578168 135.576