Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g02092 ATGAATTCCGAATCCTCTCCCGAAACGGCGTCGTACTGGTGCTACAGTTGCACACGCCTCATCAATCTATCAGATCACACCCTCATCGTTTGTCCTCACTGCGATAACGGTTTCGTTGAAGAGATCGCCGCCGGCGAGTCACCGCATCACCGTCTCAGTCCTTTCCCCGCCGACACCGTTTCTTCTCGTCGTCAAGGCTTCCGCCGACGCCGTCGTGACGCTGGTAGTCGTTCACCTTTCAATCCTGTCATCGTTCTTCGTGGAGCCGGTGAGGATGGAGTCGGAGAAGATGGCGCTGGTGCTGGTGGTAGCGCTTTTGAACTTTTCTACGATGACGGTGATGGTTCGGGGTTACGTCCGCTTCCACCGACGGTTTCGGAGTTTTTGCTTGGATCTGGATTTGATCGGTTGTTGGAGCAGTTTTCTCAGATCGAGATGAACGGTTTTGGACGGCCGGAGAATCCACCGGCGTCAAAAGCGGCGATTGAATCGATGCCAACGGTTGAGATCTGTGAAGAACACGTCAGTTGTGAATTACACTGCGCCGTTTGCAAAGAAGAGTTTGAGCTACACGCGGAGGCGCGTGAGTTACCTTGCAAGCATTTATATCATTCCGATTGCATTCTTCCATGGCTGACAGTGAGAAATTCTTGCCCGGTGTGCCGCCACGAGCTTCCATCTGATCTCAACAATCCTCTTGAAACTAGGGTTTCAGGTCAAATTGATGAAGAAGCGATAGGGTTAACGATATGGAGGTTACCTGGTGGTGGATTCGCTGTTGGACGATTCTCCGGTGGAAGAAGTGCCGGGGAGAGTCATTTTCCGGTTGTGTATACTGAGATGGATGGTGGGCTCAATGCTGGACAAGGATCGGCTCCGAGGAGAATATCTAGAACGGTTAGAGCTCATAGGGTTAGGGAAAGTCATGGAATTGGACGAGTTTTTCGGAATTTTTTCTCATTCTTTGGGAGAATTGGTTCTAGGTCAAATTCAAATTCGAATTCTGGAACAGAGAATGTTGCTTCTGTAAGTAGAAGCCGTAGCTTAGTGAATTCAATGTTCAATAGAAACTCGCGGCGACGTAGGAGAGCTTTGGAGTTGGAAGATTGA 1110 0.4982 MNSESSPETASYWCYSCTRLINLSDHTLIVCPHCDNGFVEEIAAGESPHHRLSPFPADTVSSRRQGFRRRRRDAGSRSPFNPVIVLRGAGEDGVGEDGAGAGGSAFELFYDDGDGSGLRPLPPTVSEFLLGSGFDRLLEQFSQIEMNGFGRPENPPASKAAIESMPTVEICEEHVSCELHCAVCKEEFELHAEARELPCKHLYHSDCILPWLTVRNSCPVCRHELPSDLNNPLETRVSGQIDEEAIGLTIWRLPGGGFAVGRFSGGRSAGESHFPVVYTEMDGGLNAGQGSAPRRISRTVRAHRVRESHGIGRVFRNFFSFFGRIGSRSNSNSNSGTENVASVSRSRSLVNSMFNRNSRRRRRALELED 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g02092 369 SUPERFAMILY RING/U-box 161 229 - -
Mepo2g02092 369 CDD RING-H2_RNF126-like 181 222 - -
Mepo2g02092 369 MobiDBLite consensus disorder prediction 49 79 - -
Mepo2g02092 369 FunFam E3 ubiquitin-protein ligase RING1-like 143 228 - -
Mepo2g02092 369 Pfam Ring finger domain 180 222 IPR001841 -
Mepo2g02092 369 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 228 IPR013083 -
Mepo2g02092 369 Pfam Protein of unknown function (DUF1117) 246 359 IPR010543 -
Mepo2g02092 369 ProSiteProfiles Zinc finger RING-type profile. 181 222 IPR001841 -
Mepo2g02092 369 SMART ring_2 181 221 IPR001841 -
Mepo2g02092 369 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 60 226 - -
Mepo2g02092 369 Pfam zinc-ribbon 11 42 IPR039525 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g02092 Mepo-Chr2 30403352 30405241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g02092 120 228 C3H Transcription Factor Family AT5G01980 49.541 5.48e-29 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g02092 K11982 - gmx:100804867 475.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g03960 6 51913730 51915526 Mepo2g02092 2 30403352 30405241 PCT