Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g02055 ATGGAGGGGAATTCATCATCCTCTACAACACATGATGCTCAAAATTTAGTAGATGATATCTCCCTCGTAGCCCTTCATGATCATGATGAAGAAATTTTTCGAATATGTGATGAGACATATGCAGAAGAATTACAAATACATGAAGCATTATTATTTTCCGCTCTTATGTCAAATACTACTATAGATGTAGTGGATGCAAAAGTTGATCTCAAACAGAAGCAGAAAGAGGCTTTTGTAGGTGAATATTCTTCGTCGCCGTCTTCTTCTTCTCAGTTGAAAAAATACTATTGTGCTATCTGTATGGAAGCTAAACCTGTTGAAGAAATGTTCCAAAATCGAAAATGTTCACATTCTTTCTGTGAAGACTGTGTTGGAAGATATCTAGCTGCAAAAATTCAAGAGAGTGTATCAATGGTAAAATGTCCTGATCCAAGATGCAATGATATTTTGGAGCCTCATGATTGTAGTTCAATTTTACCAAAGGATGTATTTGATAGATGGGAAAATGCACTTTGTGAGAATATGGTGTTAGGTTCACAAAAATTTTATTGTCCTTTTAATGATTGTTCAGCTATGTTGTTGAATGATGAAAAGGAAATTGTGACTGTTTCGGAATGTCCGCATTGTCATAGATTGTTCTGTGCACAATGTAAGGTTTCATGGCACACAGGTGTTGATTGTAAAGAGTTTCAAAGCTTGAAAGACGGCGAGCGAGGGAGGGAAGATCTAATGGCCATGGAACTTGCTAAGAACAAGAGATGGAAAAGATGTCCAAAGTGTGGCTTCTATGTGGAAAAAATTGTGGGATGTACTCGCATTTCATGCAGGTGTGGTAATCAATTTTGCTATGGCTGTGGTTCTCCTTGGAATAATCAGTCCCATTATTCATGTGCAACTCAATAA 903 0.3699 MEGNSSSSTTHDAQNLVDDISLVALHDHDEEIFRICDETYAEELQIHEALLFSALMSNTTIDVVDAKVDLKQKQKEAFVGEYSSSPSSSSQLKKYYCAICMEAKPVEEMFQNRKCSHSFCEDCVGRYLAAKIQESVSMVKCPDPRCNDILEPHDCSSILPKDVFDRWENALCENMVLGSQKFYCPFNDCSAMLLNDEKEIVTVSECPHCHRLFCAQCKVSWHTGVDCKEFQSLKDGERGREDLMAMELAKNKRWKRCPKCGFYVEKIVGCTRISCRCGNQFCYGCGSPWNNQSHYSCATQ 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g02055 300 CDD Rcat_RBR_unk 253 289 - -
Mepo2g02055 300 Gene3D - 224 300 - -
Mepo2g02055 300 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 65 294 IPR031127 GO:0004842|GO:0016567
Mepo2g02055 300 ProSiteProfiles Zinc finger RING-type profile. 97 145 IPR001841 -
Mepo2g02055 300 CDD BRcat_RBR_unk 178 230 - -
Mepo2g02055 300 SUPERFAMILY RING/U-box 173 231 - -
Mepo2g02055 300 FunFam RBR-type E3 ubiquitin transferase 92 178 - -
Mepo2g02055 300 ProSitePatterns Zinc finger RING-type signature. 115 124 IPR017907 -
Mepo2g02055 300 Pfam IBR domain, a half RING-finger domain 166 227 IPR002867 GO:0008270
Mepo2g02055 300 Pfam IBR domain, a half RING-finger domain 247 297 IPR002867 GO:0008270
Mepo2g02055 300 SUPERFAMILY RING/U-box 94 174 - -
Mepo2g02055 300 SUPERFAMILY RING/U-box 238 297 - -
Mepo2g02055 300 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 178 IPR013083 -
Mepo2g02055 300 SMART ibrneu5 165 227 IPR002867 GO:0008270
Mepo2g02055 300 SMART ibrneu5 237 297 IPR002867 GO:0008270
Mepo2g02055 300 ProSiteProfiles TRIAD supradomain profile. 93 300 IPR044066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g02055 Mepo-Chr2 29912340 29913315 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g02055 97 288 C3H Transcription Factor Family AT2G19610 27.941 2.39e-19 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g02055 K11975 - gmx:100815626 376.711