Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g02054 ATGGAGGGAACTTCACCATCCTCTACAGCAGATGATTTCTACTTCTCAGCCCTTCATGATCATGATGAAGAAATTTTTCGAATATCTGAAGAGACATATGCAGAGGAATTACAAATAAAAGAAGCATTATTATTTTCCACTCTTGTGGAAAATACTACTATAGATGTAAAAGAAGAAATCCAAGAAGTGGATGTAAAAGTTGATCTCAAACAGAAACAAAAAGAGGCTTTTGTAGGTGAATCTTCATCTTCTTTTTCTCAGTTGAAACAATCCTACTGTGCTATTTGTATGGAAGCTAAACCTGTTGAAGAAATGTTCAAAAACCGAAAATGTTCCCATTCTTTCTGTGAAGATTGTGTTGGAAGATATCTTGCTGAAAAAATTCGAGAAAGTATATCAATGGTAAAATGTCCTGATCCAAGATGCAATGATATTTTGGAGCCACATGATTGTAGTTCAATTTTACCAAAGGATGTGTTTGATAGATGGGAAAATGCACTTTGTGAGAATATGGTGTTAGGTTCACAAAAATTTTACTGTCCTTTTAATGATTGTTCAGCTATGTTGTTGAATGATGAAAAGGAAATTGTGACTGCTTCGGAATGTCCACATTGTCATAGATTGTTCTGTGCACAATGTAAGGTTTCATGGCACACAGGTGTTGATTGTAAAGAGTTTCAAAGCTTGAAAGACGGCGAGCGAGGGAGGGAAGATCTAATGGCCATGGAACTTGCTAAGAATAAGAGATGGAAAAGATGTCCAAAGTGTGGCTTCTATGTGGAAAAAATTGTGGGATGTACTCGCATTTCATGCAGGATCGAGATCCTACATAGGATCGATCGGATTGTGAAGGGACGTAAACACGGGAAACGTATCATGAGTGAGAAAGACAACAACGACGACCATTTCGAAGCTGAGGACGGAAGAACAAAGAAAGGGAACACAACAACTGTTTTTGGTTAG 963 0.3749 MEGTSPSSTADDFYFSALHDHDEEIFRISEETYAEELQIKEALLFSTLVENTTIDVKEEIQEVDVKVDLKQKQKEAFVGESSSSFSQLKQSYCAICMEAKPVEEMFKNRKCSHSFCEDCVGRYLAEKIRESISMVKCPDPRCNDILEPHDCSSILPKDVFDRWENALCENMVLGSQKFYCPFNDCSAMLLNDEKEIVTASECPHCHRLFCAQCKVSWHTGVDCKEFQSLKDGERGREDLMAMELAKNKRWKRCPKCGFYVEKIVGCTRISCRIEILHRIDRIVKGRKHGKRIMSEKDNNDDHFEAEDGRTKKGNTTTVFG 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g02054 320 Gene3D - 220 274 - -
Mepo2g02054 320 MobiDBLite consensus disorder prediction 290 311 - -
Mepo2g02054 320 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 64 271 IPR031127 GO:0004842|GO:0016567
Mepo2g02054 320 Pfam IBR domain, a half RING-finger domain 162 223 IPR002867 GO:0008270
Mepo2g02054 320 CDD BRcat_RBR_unk 174 226 - -
Mepo2g02054 320 ProSitePatterns Zinc finger RING-type signature. 111 120 IPR017907 -
Mepo2g02054 320 ProSiteProfiles TRIAD supradomain profile. 89 301 IPR044066 -
Mepo2g02054 320 ProSiteProfiles Zinc finger RING-type profile. 93 141 IPR001841 -
Mepo2g02054 320 SMART ibrneu5 161 223 IPR002867 GO:0008270
Mepo2g02054 320 SUPERFAMILY RING/U-box 169 227 - -
Mepo2g02054 320 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 174 IPR013083 -
Mepo2g02054 320 SUPERFAMILY RING/U-box 234 271 - -
Mepo2g02054 320 FunFam RBR-type E3 ubiquitin transferase 88 174 - -
Mepo2g02054 320 SUPERFAMILY RING/U-box 90 170 - -
Mepo2g02054 320 MobiDBLite consensus disorder prediction 290 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g02054 Mepo-Chr2 29906480 29909190 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g02054 93 272 C3H Transcription Factor Family AT2G19610 25.654 3.95e-14 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g02054 K11975 - gmx:100816161 348.977