LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mepo2g02053	ATGGAAGGAGAGAAAGTAAACGTGGTGATTGATTTGGTTAACGAGATAGCGAACATCTCAGACTTCAGACCTATGGTGAAAAAGCAATATTGTAACTTAGCACGAAGGTTAAAGCTGTTGATTCCTTTGTTTGAGGAAATTAGAGATATGAAAGATTCGATTCCGAATGATACTTCAAAAGCGTTGGTTTTGTTTAAAGATGCTCTTGATTCAGCTAAGGAACTTCTCAGATTTGGTTGTGAAGGAAGCAAGATTTATATGGTCCTTGAGAGGGACCGGATTATGAATAACTTCTATGAGGTGACAGCTCGGTTGGAACAATCACTGGATGGAATTTCCTATGATAAACTTGACATATCAGATGAAGTTAAAGAGCAGGTTGAACTGGTTCTTACCCAGTTCAGAAGAGCCAAAGGGAGAGTTGATGAACCAGATGCCAAGTTGTATGAAGATATGTCATTTCTTTACAACAATAGCAGTGATGCAGCTATAGATCCAGCTGTTCTAAGTCGATTAGCAGACAAATTGCAACTGATGGGAATAGCCGATCTTACACAAGAATCACTCGCTTTGCATGAGATGGTGGCTGTAAGTGGTGGGGATCCAGGGGCGCGCATTGAGAAGATGTCAATGTTATTGAAGAAGATAAAGGATCATGTGCAAATAGAAAACCTAGTCAAGGATGATACTAAAACAGCAAAAGGCGTTTCTTCAGGATTTTATGGACTAGGGGAAAATGATACGAATCATCAAGCCCCTGCTATTCCTAGTGACTTTAAATGTCCGATTTCCTTGGAATTGATGATGGATCCTGTCATTGTTTCAACAGGACAGACTTATGAGCGTTCTTGTATTGAGAAGTGGTTGCAAGACGGGCACGGGACGTGCCCAAAAACACAGCAGAGTCTCACCAGTACTGTTCTCACACCCAACTATGTCTTACGAAGCCTGATAGAACAATGGTGTGAAGCCAATGGCATAGAGCCACCAAAACGACCCAGCACTTCCGAGCCAAGTAAATCAGCATCAGCCTGCACCCCAGCTGAGCGAAGTAAGATTGAAAGTCTTATCCACAAGCTCACATCCGGCGGTCCCGAAGACCAGAGGTCAGCTGCCGGAGAGATCCGCCTTCTTGCAAAACGCAATGCAGATAACCGTGTAGCTATTGCTGAAGCTGGTGCAATCCCTCTCCTTGTTGGTCTCCTCTCCGTGCCAGACTCCCGAACTCAAGAGCATGCTGTTACAGCGCTTCTGAATCTCTCCATATATGAGAGTAACAAAGGAAGCATTGTTTCTTCTGGAGCAGTTCCAGGCATAGTTCATGTACTGAAAAGGGGAAGCATGGAAGCTCGGGAAAATGCAGCAGCAACACTTTTCAGCCTTTCAGTTATCGATGAAAATAAGGTTACAATTGGTTCTTCAGGAGCGATATCACCACTGGTGACACTGCTGAGTGAGGGTACCCAAAGGGGTAAGAAAGATGCTGCAACTGCACTCTTCAATTTGTGCATTTATCAGGGAAACAAGGGAAAAGCAGTGAGGGCTGGTGTTATTCCAACGCTCATGCGATTGCTGACAGAACGTAATGGGGGAATGGTGGATGAAGCATTGGCCATTTTGGCAATTTTGGCTAGTCATCCTGAAGGGAAAGCTGCCATTGGTGCTGCAGAGGCAGTGCCGGTTTTGGTAGAGTTTATCGGGAATGGATCCCCAAGGAACAAAGAGAACGCAGCCGCGGTTTTAGTTCACCTTTGTTCTGGAGATCGACAATATATAGCACAGGCACAAGAGCTAGGGGTGATGGCTCCATTGTTGGAATTGGCTCAAAACGGCACAGACAGAGGCAAAAGAAAGGCAACACAATTGATAGAGCGTATGAGCAGGATCCGTGAGCAGGAGCAGCATGAAGTTCCGACACAAACTGAACTTCAAGCTCAGAACGATGATATCCATCCACCTTTGATCATTAACCTCGATATTGACACCTAA	1989	0.4475	MEGEKVNVVIDLVNEIANISDFRPMVKKQYCNLARRLKLLIPLFEEIRDMKDSIPNDTSKALVLFKDALDSAKELLRFGCEGSKIYMVLERDRIMNNFYEVTARLEQSLDGISYDKLDISDEVKEQVELVLTQFRRAKGRVDEPDAKLYEDMSFLYNNSSDAAIDPAVLSRLADKLQLMGIADLTQESLALHEMVAVSGGDPGARIEKMSMLLKKIKDHVQIENLVKDDTKTAKGVSSGFYGLGENDTNHQAPAIPSDFKCPISLELMMDPVIVSTGQTYERSCIEKWLQDGHGTCPKTQQSLTSTVLTPNYVLRSLIEQWCEANGIEPPKRPSTSEPSKSASACTPAERSKIESLIHKLTSGGPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSVPDSRTQEHAVTALLNLSIYESNKGSIVSSGAVPGIVHVLKRGSMEARENAAATLFSLSVIDENKVTIGSSGAISPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVIPTLMRLLTERNGGMVDEALAILAILASHPEGKAAIGAAEAVPVLVEFIGNGSPRNKENAAAVLVHLCSGDRQYIAQAQELGVMAPLLELAQNGTDRGKRKATQLIERMSRIREQEQHEVPTQTELQAQNDDIHPPLIINLDIDT	662

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Mepo2g02053	662	ProSiteProfiles	U-box domain profile.	254	328	IPR003613	GO:0004842\|GO:0016567
Mepo2g02053	662	CDD	MLKL_NTD	9	135	-	-
Mepo2g02053	662	Gene3D	-	337	649	IPR011989	-
Mepo2g02053	662	ProSiteProfiles	Armadillo/plakoglobin ARM repeat profile.	516	558	IPR000225	GO:0005515
Mepo2g02053	662	FunFam	RING-type E3 ubiquitin transferase	529	648	-	-
Mepo2g02053	662	CDD	RING-Ubox_PUB	256	308	IPR045210	-
Mepo2g02053	662	MobiDBLite	consensus disorder prediction	328	347	-	-
Mepo2g02053	662	FunFam	RING-type E3 ubiquitin transferase	254	328	-	-
Mepo2g02053	662	SUPERFAMILY	RING/U-box	245	331	-	-
Mepo2g02053	662	Pfam	Neurochondrin	516	628	IPR008709	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Mepo2g02053	Mepo-Chr2	29888708	29893728	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mepo2g02053	1	652	U-box Gene Family	AT3G46510	67.939	0.0	881

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mepo2g02053	-		-	gmx:100812160	1085.48

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mepo2g02053	2	29888708	29893728	Mepo2g02053	2	29888708	29893728	ECH

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