Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g02004 ATGTTTTCTGATACTGCAGAAGGTAATGATCATCAGAAACTGAAAATACAAGAATTTTGTATAATAGTTATTGTAGTGTGGGTTTTCTTCTTTATATCTATTTACCACGGCGCATTTCTGCGTCTGTTTTTTGTAATTTACCGTGCAATCGCCATAAGAAACCGTGTTCAAAGGCAAATTCCAGATGTGTCAAATTTTCAAAGACAACTTTCAGAACTGGCGAATTTCTATCCTAGCAATTCTTCTCGACATGTTCAAAGCAGTGGATTGGAGTACTCTATGGTACAAGCATTTCCCATGTCTCAGTTTAAGAAAAATGAGGTTGAACAAAAACTAAGTGATGTGGACTGTGCCATTTGTCTAGGAGAGTTTGAAGAAGGGGAATGGGTAAAACATCTTCCAATTTGTACACATAGTTTTCATGTTTCGTGCATTGACAAATGGTTTCAATCTCATTCAAATTGTCCCCTCTGTAGATGTCATGTTATCCAAGATCATTTGTCAACCTCTGAAGACATTTTCCACTCGCTTTGA 534 0.367 MFSDTAEGNDHQKLKIQEFCIIVIVVWVFFFISIYHGAFLRLFFVIYRAIAIRNRVQRQIPDVSNFQRQLSELANFYPSNSSRHVQSSGLEYSMVQAFPMSQFKKNEVEQKLSDVDCAICLGEFEEGEWVKHLPICTHSFHVSCIDKWFQSHSNCPLCRCHVIQDHLSTSEDIFHSL 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g02004 177 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 164 IPR013083 -
Mepo2g02004 177 CDD RING-H2_EL5-like 116 159 - -
Mepo2g02004 177 Pfam Ring finger domain 116 159 IPR001841 -
Mepo2g02004 177 SMART ring_2 117 158 IPR001841 -
Mepo2g02004 177 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 20 169 - -
Mepo2g02004 177 ProSiteProfiles Zinc finger RING-type profile. 117 159 IPR001841 -
Mepo2g02004 177 SUPERFAMILY RING/U-box 109 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g02004 Mepo-Chr2 29010860 29011528 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g02004 21 159 C3H Transcription Factor Family AT3G10910 31.655 7.74e-20 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g02004 - - aprc:113859782 167.548