Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g02003 ATGGCTCCAAAAGGTGATGTTTCTAAGAAGACCGACCCAAAGGCACAGGCCTTGAAAGCTGCCAAGGCAGTCAAGTCAGGCACTGCCATTAAGAAGAAGGCGAAGAAGATCAGAACAACTGTTACTTTCCATCGCCCAAAGACACAAACAAGGGATAGGAACCCCAAATATCCTCGCATCAGTGCCACGCCAAGAAACAAGCTGGACCACTACCAGATTTTGAAGTTCCCACTCACCACAGAGTCCGCAATGAAGAAAATTGAGGATAACAACACTTTGGTTTTCATTGTTGACTTGCGTGCTGATAAGAAAAAGATTAAGGATGCAGTGAAGAAAATGTATGACATCCAGGCGAAGAAGGTTAATACCTTGATCAGGCCCGATGGTACCAAGAAGGCCTATGTTAGGTTGACACCTGATTACGATGCATTGGATGTAGCAAACAAGATTGGGATCATCTAA 462 0.4459 MAPKGDVSKKTDPKAQALKAAKAVKSGTAIKKKAKKIRTTVTFHRPKTQTRDRNPKYPRISATPRNKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g02003 153 ProSitePatterns Ribosomal protein L23 signature. 131 146 IPR001014 GO:0019843
Mepo2g02003 153 Gene3D - 34 153 IPR012677 -
Mepo2g02003 153 Hamap 50S ribosomal protein L23 [rplW]. 73 153 IPR013025 GO:0003735|GO:0005840|GO:0006412
Mepo2g02003 153 MobiDBLite consensus disorder prediction 43 62 - -
Mepo2g02003 153 Pfam Ribosomal protein L23, N-terminal domain 14 62 IPR005633 -
Mepo2g02003 153 MobiDBLite consensus disorder prediction 1 16 - -
Mepo2g02003 153 NCBIfam 50S ribosomal protein L23 77 153 IPR019985 GO:0003735|GO:0005840|GO:0006412
Mepo2g02003 153 FunFam 60S ribosomal protein L23a 31 153 - -
Mepo2g02003 153 MobiDBLite consensus disorder prediction 1 23 - -
Mepo2g02003 153 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 70 146 IPR012678 GO:0003735|GO:0005840|GO:0006412
Mepo2g02003 153 Pfam Ribosomal protein L23 73 135 IPR013025 GO:0003735|GO:0005840|GO:0006412
Mepo2g02003 153 PANTHER 60S RIBOSOMAL PROTEIN L23A 7 153 IPR013025 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g02003 Mepo-Chr2 29007847 29010366 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g02003 26 153 Cytoplasmic Ribosomal Protein Gene Family AT2G39460 89.844 2.16e-67 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g02003 K02893 - thj:104810799 254.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g03903 6 51296144 51298758 Mepo2g02003 2 29007847 29010366 PCT