Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g01888 ATGAGTTCTGAAGAAAATAAACATGTCACTGAGGATCATGAACATGATGATGATGATACTTCTTGCAGAAGAACAGTTTCTCTTCCTGTTATTCACAAGGATGATGATGATTCAATGGGTATAACTGAAGAAACATCACATGTTCCTCCCAGGAAGAAACAAAATCTTCTCCTAGAAATACCATCAAGAACACCAGAAGAGTGTTCAGAAGATTTTGTTGCAATCAAAATGCCAATGACACCAAGTCCTACTCCAACTCCTACTCCCAAGAGAGTGAATTTTCTTATGACTTCTCGCTCGGTTGATGCTCCGACAAATAATTCTCCTGGATCTGCAACACCAAAAGGCAAATCATCTATAAGAAAGATGCTGCCAAAATTGAGTTTCAGGTATAGGACACCGGCAGATATTGAAAAGGCGAATACACCAACTCGGGAAGTTTCCTCTTCCAGCACTCGAGAAAAGCCTTTAATATCAAGATCATTGTCACTTGGTAAAATATTTACTCCTAGGATGAAAAGAACTTCATCATTGCCATTAGGAGAAATTGGACATTCAAACCCTGAATCTACTCATGGTGGAAATGGAAGTGTTGGTGGTCCTCTGAGTAAAAAAGAGACTCGGCGAAAGATAGCGCGTTCTCTTTCAATGCCTGCCAACAACAACAAGGACAAAAGTATAAGGAGGATGGATTCGTTTTTTCGCGTTGTTCCTTCTACTCCTCGAATAAAAGAAGGAAATGAATTGTTGAACACGTCCCCGCCAAAGGATGCTGAAATCGAAGATGATGATGATGATGGTGAAGATATACCTGAAGAAGAGGCGGTGTGTAGAATCTGTCTGGTTGAATTATGTGAAGGAGGTGAGACCTTCAAGTTGGAATGTAGCTGTAAAGGTGAACTTGCTTTGGCTCACAAAGAATGTGCTATTAAATGGTTTAGTATAAAGGGCAACAAGACATGTGATGTCTGCAAAAACGAGGTTACAAACCTTCCTGTCACTCTATTACGAATCCAGAGTGTTCGAAATCGGAATGGTGGATTAAGTCGAGCTCAGCTTGAAGATGTAAACGGGTACAGGGTTTGGCAGGAAGTTCCAGTGCTTGTCATTGTTAGCATGTTGGCCTATTTTTGTTTTCTTGAGCAACTGTTGGTGACAAAAATGGGAACTGGTGCAATTGCCATATCTCTTCCATTTTCATGTGTATTAGGTCTGCTCTCCTCCATGACATCTTCAACCATGGTGATGAGCAGGTTCATATGGATTTATGCATCCTTCCAGTTTGCTCTGGTGGTTCTCTTCGCGCATATATTTTACTCCTTGGTTCATGTGCAAGCAGTTCTGTCAATCCTTCTTGCAACATTTGCTGGTTTTGGTGTAGTAATGAGTGGAAGTTCAATGCTTGTGGAGTTTTTCAGATGGAGAAGGAGATGGCAGGCTTCATTAGAGCAACAACATGGCCCTCTACCGATGACACAAGCAGGACAACAGCCTCTAACTGTAACCACGCCACGTTCAGGCCAATCCAACCACAATCAATCTATAGTGCAAAATCAACTAGACTCAAGTCAAAGCTGA 1578 0.4151 MSSEENKHVTEDHEHDDDDTSCRRTVSLPVIHKDDDDSMGITEETSHVPPRKKQNLLLEIPSRTPEECSEDFVAIKMPMTPSPTPTPTPKRVNFLMTSRSVDAPTNNSPGSATPKGKSSIRKMLPKLSFRYRTPADIEKANTPTREVSSSSTREKPLISRSLSLGKIFTPRMKRTSSLPLGEIGHSNPESTHGGNGSVGGPLSKKETRRKIARSLSMPANNNKDKSIRRMDSFFRVVPSTPRIKEGNELLNTSPPKDAEIEDDDDDGEDIPEEEAVCRICLVELCEGGETFKLECSCKGELALAHKECAIKWFSIKGNKTCDVCKNEVTNLPVTLLRIQSVRNRNGGLSRAQLEDVNGYRVWQEVPVLVIVSMLAYFCFLEQLLVTKMGTGAIAISLPFSCVLGLLSSMTSSTMVMSRFIWIYASFQFALVVLFAHIFYSLVHVQAVLSILLATFAGFGVVMSGSSMLVEFFRWRRRWQASLEQQHGPLPMTQAGQQPLTVTTPRSGQSNHNQSIVQNQLDSSQS 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g01888 525 ProSiteProfiles Zinc finger RING-CH-type profile. 269 331 IPR011016 GO:0008270
Mepo2g01888 525 MobiDBLite consensus disorder prediction 142 158 - -
Mepo2g01888 525 MobiDBLite consensus disorder prediction 1 64 - -
Mepo2g01888 525 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 332 IPR013083 -
Mepo2g01888 525 SUPERFAMILY RING/U-box 273 328 - -
Mepo2g01888 525 MobiDBLite consensus disorder prediction 177 208 - -
Mepo2g01888 525 MobiDBLite consensus disorder prediction 99 158 - -
Mepo2g01888 525 MobiDBLite consensus disorder prediction 99 115 - -
Mepo2g01888 525 Pfam RING-variant domain 277 324 IPR011016 GO:0008270
Mepo2g01888 525 CDD RING_CH-C4HC3_MARCH 277 325 - -
Mepo2g01888 525 PANTHER OS02G0165000 PROTEIN 5 486 - -
Mepo2g01888 525 SMART ringv_2 276 325 IPR011016 GO:0008270
Mepo2g01888 525 MobiDBLite consensus disorder prediction 488 525 - -
Mepo2g01888 525 MobiDBLite consensus disorder prediction 180 197 - -
Mepo2g01888 525 MobiDBLite consensus disorder prediction 1 50 - -
Mepo2g01888 525 MobiDBLite consensus disorder prediction 244 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g01888 Mepo-Chr2 27627395 27632121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g01888 261 331 C3H Transcription Factor Family AT2G37950 47.222 2.17e-14 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g01888 - - gmx:100788108 736.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g03812 6 50251825 50255921 Mepo2g01888 2 27627395 27632121 PCT