Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g01867 ATGAAGGAAAGTGAGAAAGGGTATTTGGATCCACAGCTATGGCATGCTTGTGCTGGTGGAATGGTTCAGATACCTCAAGTGAATTCAAAAGTTTTCTACTTTCCACAAGGACATGCTGAACATGCTAATACAAACATTGATCTAAGGGTTTCAGTTTCACCACTGATTCTTTGTAAGGTTGTTGCTGTTAAATTCATGGCTGACCCTGAAACTGATGAAGTTTTTGCTGTAATGAAGCTTCTTCCTTTGAGGAATTCAGAGCTTGGTTATGATGAAGGTGGTCGTGGTGGTGGTGGTGATGGTTTGGAAAATTCAGAAAAGCCTGCATCTTTTGCTAAGACTTTGACTCAATCTGATGCAAACAATGGTGGGGGGTTTTCTGTTCCAAGGTACTGTGCTGAGACGATCTTTCCGAGGCTTGATTACGCGGCTGAGCCGCCTGTTCAGACGGTGGTGGCGAAGGATGTGCACGGTGAGCTTTGGAAGTTTAGGCATATTTATAGAGGGACACCGCGCCGGCACTTGCTTACGACAGGGTGGAGTAGTTTTGTGAACCAGAAGAAGCTTGTTGCTGGTGATTCTGTGGTGTTTTTGAGGGCTGAGAATGGCGAATTGTGTGTTGGAATTCGTAGGGCGAAAAAGGGAATTGGTGGTGGTTTTGATGGTTCATCTTGTGGTTGGACTTCAGGTTCTGGTTCTAACAATGTAAATTGTGGAATTGGACCTTTTGGAGCATTTTCTTTTTTCTTGAAAGAAGAGAATAAGACATTGAGAAATGGTTGTTTTGATGGTAATTTGAGTGGAAGAGTGAGAGTGAGGGCTGAAGATGTTATGGAAGCTGTGAAATTGGCTGCTAATAACCAACCGTTTGAAGTTGTTTACTATCCAAGAGCAAGCACACCTGAATTCTGTGTTAAGGCTTCAGCTGTGAGAGCTGCTATGAGGATTCAATGGTGTTCTGGGATGAGGTTCAAGATGCCCTTTGAAACTGAAGACTCTTCTAGAATTAGTTGGTTTATGGGAACAATTGCTTCTGTTCAGGTTGTTGATCCTATTCGCTGGCCTAATTCTCCGTGGCGCCTTCTTCAGGTTACATGGGATGAGCCAGATTTACTACAAAACGTGAAGCGTGTTAGTCCGTGGTTGGTCGAATTAGTATCAAATGTACCAGTCATTCATTTCAGCCCTTTCACTCCACCGAGGAAGAAGCTGCGGTTTCCATCAAACCTCGACTTCCCCCTCGATGTTCAATTTCCGTCACCGACATTTTCAGGCAACCAGCTCGGGCCAAACAGCCCCTTCTTTGGTTTATCTGACAATGCTCCTGCATGTATACAGGGAGCCAGGCATGCTCAATTTGGAGGAATATCTCTTTCAGATCTCAACCTTAACAACAATAAACTTCAGTTAGGGTTGTTTCCTACTAACATTCAGCACCTTGATGTGCATAGTAGGATTTCAAATAGCAACAACATGATGAACAACAATGATAAGACCAAAGAAAGCTTATCATGCCTGTTGAGTATAGGGAAAAAATATGATAAAAGTTTGGAGAAATCTCAATCTGATGACAATGTTGTTAAGAAACATCAGTTTTGTCTTTTTGGTCAACCAATACTCACTGAGCAACAAATTTCTAGAAACTGTTCTGAAAAAAATTCAGTAGATGATAGTAAAGACAAAGAGAAGTGGTTTTTGGATGCATTTTCAGCTGGGAAAGGTTCTAATGCTGCTGAGTTTAGTTGGCAACTTGGATTGGATATTGGTCATTGCAAGGTTTTCTTGGAGTCAGAAGATGTTGGAAGGACCCTTGATTTATCACTTCTTGGTTCTTATGAAGAGCTCTACAAGAAACTTGCCAACATGTTTGATTTAGAAAAGTCTGAGATGTTGAATCATGTTTTTTACCGTGATGCAACAGGTGCTGTGAAGCAAATTGGTGAAGAACCTTTCAGTGAATTCATGAAGTCAGCAAAAAGATTGACAATTCTGACAGATTCAGGCAGCAAAAATGTCAGAGGGGCATGGATTACAGGAACTCACAAGGGTGAACATGGATTGGATGCATCAAACAAAACAGGACCTCTAAGCATATTTGCATAA 2103 0.4175 MKESEKGYLDPQLWHACAGGMVQIPQVNSKVFYFPQGHAEHANTNIDLRVSVSPLILCKVVAVKFMADPETDEVFAVMKLLPLRNSELGYDEGGRGGGGDGLENSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYAAEPPVQTVVAKDVHGELWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSVVFLRAENGELCVGIRRAKKGIGGGFDGSSCGWTSGSGSNNVNCGIGPFGAFSFFLKEENKTLRNGCFDGNLSGRVRVRAEDVMEAVKLAANNQPFEVVYYPRASTPEFCVKASAVRAAMRIQWCSGMRFKMPFETEDSSRISWFMGTIASVQVVDPIRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNVPVIHFSPFTPPRKKLRFPSNLDFPLDVQFPSPTFSGNQLGPNSPFFGLSDNAPACIQGARHAQFGGISLSDLNLNNNKLQLGLFPTNIQHLDVHSRISNSNNMMNNNDKTKESLSCLLSIGKKYDKSLEKSQSDDNVVKKHQFCLFGQPILTEQQISRNCSEKNSVDDSKDKEKWFLDAFSAGKGSNAAEFSWQLGLDIGHCKVFLESEDVGRTLDLSLLGSYEELYKKLANMFDLEKSEMLNHVFYRDATGAVKQIGEEPFSEFMKSAKRLTILTDSGSKNVRGAWITGTHKGEHGLDASNKTGPLSIFA 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g01867 700 ProSiteProfiles B3 DNA-binding domain profile. 111 213 IPR003340 GO:0003677
Mepo2g01867 700 Pfam B3 DNA binding domain 111 212 IPR003340 GO:0003677
Mepo2g01867 700 Gene3D - 588 673 - -
Mepo2g01867 700 Gene3D - 109 213 IPR015300 -
Mepo2g01867 700 Pfam Auxin response factor 280 363 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Mepo2g01867 700 SMART B3_2 111 213 IPR003340 GO:0003677
Mepo2g01867 700 Gene3D - 318 391 - -
Mepo2g01867 700 FunFam Auxin response factor 109 213 - -
Mepo2g01867 700 FunFam Auxin response factor 318 391 - -
Mepo2g01867 700 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 8 667 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mepo2g01867 700 CDD B3_DNA 110 211 IPR003340 GO:0003677
Mepo2g01867 700 ProSiteProfiles PB1 domain profile. 588 668 IPR000270 GO:0005515
Mepo2g01867 700 SUPERFAMILY DNA-binding pseudobarrel domain 105 212 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g01867 Mepo-Chr2 27379706 27383935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g01867 4 672 B3 DNA Binding Superfamily AT4G30080 56.358 0.0 723
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mepo2g01867 B3 3.4e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g01867 - - gmx:100814686 1031.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g03829 6 50416091 50420305 Mepo2g01867 2 27379706 27383935 PCT