Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g01801 ATGTCGTCAGAACCACCACCCTCCGCCTTGGACAAACTCATGTCCAATGCACGCGCTGCCGCCTCCAAGAAGAAACCACCACCTTCATCATCTTCCAAGAAACGAAAAGTTCCTACTCCTCCCCCTTCTTCATCCCCTCACAAAACCTTAGAAACCGTTATAAACTCTAATAACAACCTCAAAACCGTAGAAACCGTTCAAGAACCCAAAGAAACCGTTCATGAAGATCCATGGAGCAAGATCCGCAACACTCCATCTTCTTCCAACGGGATAGTTGCTGAATTGAAGGAAAAGGTTTCGGAGCTGAAGAAGAAACCGGCGAATTTTGATCCGAGTTCGGTTGTTTGCTGGGAGAAAGACAAACCTGTGCCGTTTTTGTTTCTCTCTTTAACGTTCGATTTGATTAGCAAAGAGAGTGGAAGAATTGTGATCACTGAGATTGTTTGTAATCTTTTGAGGACTGTGATACATGCCACACCTGATGATCTTGTTCGGGTTGTTTATCTTTCTGTGAATAAAATTGTGCCCGCGTATAAGGGGTTAGAATTGGGAATCGGTGATGCTTCGATCATTAGGGCGCTTGCTGAGGCGTATGGAAGGACTGAGCAACATCTTAAGTCTCAGTATAAGGAAAAAGGTGATTTAGGTTTAGTTGCGATTGAGAGCCGTTCTTCACAGCCTATGATGCGGAAGTTTGATGCTTTGACTATTAGGAAGGTTTTTGACACATTTCATCTTATTGCAAAGGAATCTGGAAAAGGGAGTCAAAAGCAGAAAAATAATCACATAAAGTCACTCCTTCTTGCTGCAACTGATTGTGAACCTCTATATATAATCCGTTTGCTACAGGGAAAATTGCGAATTGGATATGCCGAGCAAACTCTGTTGACTGCATTAGGCCAAGCTGCAGTGTACACAGAAGAGCATTCTAAACCGCCTCCTGGAATTACGTCTCCTTTTGAAGAGGCGGCAAAGATTGTTAAAAAAGTATATTCTGTTCTTCCCGATTATGACAAAATTGTGTCTGCACTCCTTAAGGATGGTGTATGGGAACTTCCAATGAAGTGTGATTTTACTCTTGGCGTTCCAGTTGGGCCTATGCTGTCAAAAGCAACCAAGAGTGTATCTGAAATTCTAAATAAGTTCCAGGGTGTAGAGTTTACGTGTGAGTACAAATACGATGGAGAGCGTGCTCAGATACATTTCTTGGAGAATGGCGCAGTAGAGATCTACAGTAGAAATGCTGAACGGAACACTGGGAAGTATCCTGATGTTATTGCTGCAGTTTCAAGGTTAAAGAAAAGAACAGTGTCATCTTTTATCCTTGATTGTGAACTTGTTGCATATGATCATGCAAAACAGAAAATCCTTCCTTTCCAGGTGCTTAGTACTCGATCCCGCAAAAATGTAGCAAAGAGTGGCATAAAGGTTGCTGTTTGTGTATTTGCTTTTGATTTGTTGCACCTTAATGGCCACAAAATTTTTCAGGAAAACCTTAAAATCCGTAGAGAGCGTCTATACACCTCTTTTGAGGAAGAGTCTGGATTCCTTCAGTTTGCGACATCAACTACATCAAATGACGTTGAGGAGATACAAGAATTTTTTGACAAAGCTATTGAGGCAAGTTTAGGGGACTCCCTAGATTTGGTACCTATTGGTGCTTTCCATGGTCGTGGTAAACGCACAGGAGTGTATGGTGCTTTTCTCGTTGCTTGCTATGACAACAATAACAACGAATTTCAAAGTATTGTCAAGCTAGCAACTGGATTCAAAGAGGAAGAGCTTAAAGAACGTTCTGCCATCCTTCGCTCGAAAGTGATTCCCAAACCAAAGGTATATTATAATTGTGGAGATTCAATCAATCCTGATGTTTGGTTTGAAGCTAGCGAGGTGTGGGAGGTGAAAGCTGCAGACCTGACCATTAGCCCTGTTTACCGAGCTGCAGAGGGCAAAGTAGATCCCAATAAGGGCATATCTCTTCGATTTCCGCGTTTCATTCGAGTTCGGCCTGACAAAACTCCTGAAGAGGCCTCTTCGTCTGAGCAGATTGCAGAAATGTATAATGCTCAAAAACTCAATCACACCGGCCAACAGGATGACGATGAAGACGAAGATGATTAA 2121 0.4239 MSSEPPPSALDKLMSNARAAASKKKPPPSSSSKKRKVPTPPPSSSPHKTLETVINSNNNLKTVETVQEPKETVHEDPWSKIRNTPSSSNGIVAELKEKVSELKKKPANFDPSSVVCWEKDKPVPFLFLSLTFDLISKESGRIVITEIVCNLLRTVIHATPDDLVRVVYLSVNKIVPAYKGLELGIGDASIIRALAEAYGRTEQHLKSQYKEKGDLGLVAIESRSSQPMMRKFDALTIRKVFDTFHLIAKESGKGSQKQKNNHIKSLLLAATDCEPLYIIRLLQGKLRIGYAEQTLLTALGQAAVYTEEHSKPPPGITSPFEEAAKIVKKVYSVLPDYDKIVSALLKDGVWELPMKCDFTLGVPVGPMLSKATKSVSEILNKFQGVEFTCEYKYDGERAQIHFLENGAVEIYSRNAERNTGKYPDVIAAVSRLKKRTVSSFILDCELVAYDHAKQKILPFQVLSTRSRKNVAKSGIKVAVCVFAFDLLHLNGHKIFQENLKIRRERLYTSFEEESGFLQFATSTTSNDVEEIQEFFDKAIEASLGDSLDLVPIGAFHGRGKRTGVYGAFLVACYDNNNNEFQSIVKLATGFKEEELKERSAILRSKVIPKPKVYYNCGDSINPDVWFEASEVWEVKAADLTISPVYRAAEGKVDPNKGISLRFPRFIRVRPDKTPEEASSSEQIAEMYNAQKLNHTGQQDDDEDEDD 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g01801 706 NCBIfam ATP-dependent DNA ligase 182 541 IPR000977 GO:0003910|GO:0005524|GO:0071897
Mepo2g01801 706 FunFam DNA ligase 395 520 - -
Mepo2g01801 706 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 358 541 - -
Mepo2g01801 706 CDD OBF_DNA_ligase_I 544 689 - -
Mepo2g01801 706 CDD Adenylation_DNA_ligase_I_Euk 355 542 - -
Mepo2g01801 706 Gene3D - 545 691 IPR012340 -
Mepo2g01801 706 Gene3D - 376 542 - -
Mepo2g01801 706 Gene3D DNA ligase/mRNA capping enzyme 395 520 - -
Mepo2g01801 706 FunFam DNA ligase 101 368 - -
Mepo2g01801 706 Pfam DNA ligase N terminus 124 299 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Mepo2g01801 706 Pfam ATP dependent DNA ligase C terminal region 561 672 IPR012309 GO:0003910|GO:0006281|GO:0006310
Mepo2g01801 706 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 390 398 IPR016059 GO:0003909
Mepo2g01801 706 Gene3D - 100 368 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Mepo2g01801 706 ProSiteProfiles ATP-dependent DNA ligase family profile. 472 574 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Mepo2g01801 706 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 25 543 - -
Mepo2g01801 706 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 106 356 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Mepo2g01801 706 FunFam DNA ligase 541 700 - -
Mepo2g01801 706 Pfam ATP dependent DNA ligase domain 366 542 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Mepo2g01801 706 MobiDBLite consensus disorder prediction 686 706 - -
Mepo2g01801 706 MobiDBLite consensus disorder prediction 1 57 - -
Mepo2g01801 706 SUPERFAMILY Nucleic acid-binding proteins 544 690 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g01801 Mepo-Chr2 26492884 26500036 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g01801 7 701 Core DNA Replication Machinery Family AT1G08130 60.000 0.0 894
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g01801 K10747 - gmx:100783155 929.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo2g01801 2 26492884 26500036 Mepo2g01801 2 26492884 26500036 ECH