Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g01676 ATGCCAAGGGGAAAGGCAAAATCTGAGACTGAGCCTGAAAAGCCAGTTGAATCTGATGAGAAGGTTGACCTTGAAGAGGAAAATGATCCTGAGGAAGAAATGGAAGAAGAGGTTGAGTATGAAGAAGTAGAAGAAGAGGAGGAAGTGGAAGAAATCGAAGAGGAGGTGGAAGAAGAGGAGGAGGACCCAGATGAGGAAGAGGAAGAAGAAGAGGAGGAGGAGGAGGAAGAAGAGGTCGAAGAAGTGGAAGAAGATGATGCCATGCAAAACCTTGATGATGATGAGAAGAAAAAGCATGCTGAACTTCTTTCTCTTCCTCCTCACAAGTCTGAAGTCTACGTTGGTGGCATTCCTCTTGATGCCAAAAGTGAAGATTTGAAAGAATTTTGTGAGCGAATTGGGAAAGTTGTACAGGTTCGAATAATGAAAGGAAAAGATGCTTCTGAGAATAAGGGATTTGCTTTTGTTACTTATAGAAATGTAGAACTGGCTTCTAAAGCCATTGAGGAGCTGAATAATACCGAGTTTAAGGGTAGGAAAATAAAATGTTCTACATCTCAAGCAAAAAATCGTCTTTTTATTGGTAATATTCCTAGAAGCTGGGGCGAAAAAGACCTGAAGAAGGTTGTGACTGACATTGGACCTGGAGTTACTGCTGTTGAACTAGTCAAGGATATGAAGAACATTAGCAATAACCGTGGCTTTGCTTTTATCGACTATCATAATAATCAGTGTGCTGAATATTCAAGGCAAAAGATGATGAGCCCGTCATTTAAGCTTGGTGACAATTCCCCAACAGTGAGCTGGGCTGACCCTAAAAATTCTGATTCCTCTGCTTCATCCCAGGTGAAGGCAGTATATGTGAAGAACCTTCCCAAGAATGTGACTCAAGAGCAGTTGAAGAAGCTTTTTGAACACCATGGGAAGATCACAAAGGTGGTTCTACCGCCACCAAAGTCTGGTCAGGAAAAGAACAGAATCGGCTTCGTACATTTTGCAGAGAGATCAAATGCTATGAAAGCACTAAAAAACACTGAAAGATATGAATTAGATGGTCAAAATTTAGAGTGTTCTTTAGCAAAGCCACAGGCTGATCAGAAGGCCGTAGTATCAAATACACAGACGCAAGGATTGCTTCCAAGTTATCCGCCACCTGTTGGTTATGGTTTGGTTGGGAATCCATATGGTGCACTTGGTGCAGGATATGGTGCTCCTGGTCTTGCTCAGCCTTTGATGTATGGACCGGGTCAAACTCCTGGTGGAATGGCCATGATGCCGATGCTTCTGGCTGATGGACGCATCGGATATGTCTTGCAACAACCAGGATTGCAGCCACACGCCCCACACACCCCACACACCCCGCACACCCCACATTCACATCAAAGAGGTGGCAGGAGTGGCGGCGGCGGCGGCGGGAGTGGTAGTGGCAACAGGAGTACAGGCAGTTCAAGTAAAGGAAGGCACAACAATGATAGTGGCCAAGGGCGCAGATACCGCCCATATTAG 1506 0.4489 MPRGKAKSETEPEKPVESDEKVDLEEENDPEEEMEEEVEYEEVEEEEEVEEIEEEVEEEEEDPDEEEEEEEEEEEEEEVEEVEEDDAMQNLDDDEKKKHAELLSLPPHKSEVYVGGIPLDAKSEDLKEFCERIGKVVQVRIMKGKDASENKGFAFVTYRNVELASKAIEELNNTEFKGRKIKCSTSQAKNRLFIGNIPRSWGEKDLKKVVTDIGPGVTAVELVKDMKNISNNRGFAFIDYHNNQCAEYSRQKMMSPSFKLGDNSPTVSWADPKNSDSSASSQVKAVYVKNLPKNVTQEQLKKLFEHHGKITKVVLPPPKSGQEKNRIGFVHFAERSNAMKALKNTERYELDGQNLECSLAKPQADQKAVVSNTQTQGLLPSYPPPVGYGLVGNPYGALGAGYGAPGLAQPLMYGPGQTPGGMAMMPMLLADGRIGYVLQQPGLQPHAPHTPHTPHTPHSHQRGGRSGGGGGGSGSGNRSTGSSSKGRHNNDSGQGRRYRPY 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g01676 501 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 9 483 - -
Mepo2g01676 501 MobiDBLite consensus disorder prediction 440 501 - -
Mepo2g01676 501 MobiDBLite consensus disorder prediction 472 489 - -
Mepo2g01676 501 FunFam RNA recognition motif-containing protein 16 190 - -
Mepo2g01676 501 SUPERFAMILY RNA-binding domain, RBD 110 275 IPR035979 GO:0003676
Mepo2g01676 501 MobiDBLite consensus disorder prediction 1 21 - -
Mepo2g01676 501 SMART rrm1_1 285 358 IPR000504 GO:0003723
Mepo2g01676 501 SMART rrm1_1 111 184 IPR000504 GO:0003723
Mepo2g01676 501 SMART rrm1_1 191 268 IPR000504 GO:0003723
Mepo2g01676 501 Gene3D - 3 190 IPR012677 -
Mepo2g01676 501 Gene3D - 191 271 IPR012677 -
Mepo2g01676 501 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 284 362 IPR000504 GO:0003723
Mepo2g01676 501 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 190 272 IPR000504 GO:0003723
Mepo2g01676 501 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 273 382 - -
Mepo2g01676 501 SMART rrm2_1 111 184 IPR003954 GO:0003676
Mepo2g01676 501 SMART rrm2_1 285 358 IPR003954 GO:0003676
Mepo2g01676 501 CDD RRM_SF 112 184 - -
Mepo2g01676 501 Gene3D - 272 379 IPR012677 -
Mepo2g01676 501 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 188 IPR000504 GO:0003723
Mepo2g01676 501 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 182 IPR000504 GO:0003723
Mepo2g01676 501 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 192 253 IPR000504 GO:0003723
Mepo2g01676 501 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 286 355 IPR000504 GO:0003723
Mepo2g01676 501 MobiDBLite consensus disorder prediction 22 89 - -
Mepo2g01676 501 MobiDBLite consensus disorder prediction 1 89 - -
Mepo2g01676 501 SUPERFAMILY RNA-binding domain, RBD 279 369 IPR035979 GO:0003676
Mepo2g01676 501 Coils Coil 31 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g01676 Mepo-Chr2 24631526 24636503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g01676 126 445 Eukaryotic Initiation Factors Gene Family AT4G34110 25.714 3.19e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g01676 K13161 - gmx:100806658 644.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo2g01676 2 24631526 24636503 Mepo2g01676 2 24631526 24636503 ECH