Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g01598 ATGGCGCCGAAGAGGTCATCAAGAGGAAAACAAAAAATAAAGTTGAAAAAAATTGAGAAAAAAGATGATCTCTTTGTTGCATTTACAACGAGAAAGTCTGGAATTTATAACAAGGCCTCTGAGTTAACAACACTTTCAGGGGCCTCAGTTGATATTCTCATGCTTTCTCCAACGGGAAAACCATTTTGTTATGGAGAACCATCTTCTGAATCTATAACAAAAACTAGTTTGAAGGATGAAAATCCTTCAATGGAAGAGGAAATGATGAAACCGGAGATTATAGAGCAAAATGAAAAAAATGATGATCTTTTGGATAAAAAGCATGTTGCAGAAGCACAACGTAAAAATTTGAAGATGTTGCAAAGTTCTGGATATTGGTCGATAACAGAGGACCAATATGATCAAGTGAAAGAAATTGACAAATCCTTAGTTGGTGTTGTAAATAAATTGATAACTAATGTCTTGAAAACTGGAGGAGAGATTGACCCTCATGCAATTTCTACCATTGAGGAACTGAATGGAGTCAAAACAAATCCTCTTTATGTCTTTGAGGACAACACCAAAGATCATGAAGTTGGTGCAAGTAAAGGTATGGTTGCTAATGCTTCTCAAGATATAGCTACAAAAAAACACAAGGAGTCAACCTTATTGCTGTAA 657 0.3531 MAPKRSSRGKQKIKLKKIEKKDDLFVAFTTRKSGIYNKASELTTLSGASVDILMLSPTGKPFCYGEPSSESITKTSLKDENPSMEEEMMKPEIIEQNEKNDDLLDKKHVAEAQRKNLKMLQSSGYWSITEDQYDQVKEIDKSLVGVVNKLITNVLKTGGEIDPHAISTIEELNGVKTNPLYVFEDNTKDHEVGASKGMVANASQDIATKKHKESTLLL 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g01598 218 Coils Coil 93 113 - -
Mepo2g01598 218 Gene3D - 21 90 IPR036879 GO:0003677|GO:0046983
Mepo2g01598 218 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Mepo2g01598 218 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Mepo2g01598 218 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Mepo2g01598 218 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Mepo2g01598 218 SUPERFAMILY SRF-like 9 82 IPR036879 GO:0003677|GO:0046983
Mepo2g01598 218 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Mepo2g01598 218 PANTHER MADS BOX PROTEIN 10 141 - -
Mepo2g01598 218 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g01598 Mepo-Chr2 23789618 23790910 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g01598 5 72 Type I MADS-box Gene Family AT4G36590 47.059 2.50e-17 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mepo2g01598 SRF-TF 9.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g01598 - - mtr:11435223 102.064